Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g716 ATGTTTCCTGTGTTCCCCAATTCCAATGAAGGGAAGTCAGTTCAACTCAGCCCTTTGTCTTTAGGGGCGCATCTCCAAGGAGCCCAGCAATTTCAAACCCCATCATCTCTTGTTTCAGACATGATCCAACCAGCAAATTTTGTTCTTTCTGGAAACTGGGAAAACGCCCAAGAATCTCTACAAAATTGGATGAGAATGAAGAGCCTGAGAAACAAAGAAAAGACTTTGCTATCCATCGGAAATGGGTCAGGATCAAGCCAGTTCCCAATTCACAGAGCTGGCAATGTTTTGGAACCAATGGGATCTGCAGGCTTTGGGGTCGGACATGGAGGGGCTGGAGACGGGCATCAGAAGGAACTACCTCATCAAGTCATCAATGGCTTCAGCATGGTGAATCCCTATGAAGTGAATGCAGAGAAACAAGCTGTTCAGGGGGCACACCCTTACCATCAGTTCATTAACATGTTCAGTCCCGGAAATGGAAGTACAGAGACTGTCATCAACACAGCTGATGCTGATGCCACAGAAACAGCCGCTGCTGAGAAGATTAGGCGCAGAATGATAAAGAACAGAGAATCTGCTGCCAGGTCAAGAGCAAGGAAACTAGCTTACGATGCTCAACAACAAATAGAAATTGCAAAGCTGAAGAAGGAGAATGAGTTTCTGAGAAGGATTATAAGGGTTCTCTTGACTGTTATAAAGAAGAAACGAGCACAGGTTACCAAGTTATCAAGGACCTTCTCAGAGCCGCCATAA 756 45.37 MFPVFPNSNEGKSVQLSPLSLGAHLQGAQQFQTPSSLVSDMIQPANFVLSGNWENAQESLQNWMRMKSLRNKEKTLLSIGNGSGSSQFPIHRAGNVLEPMGSAGFGVGHGGAGDGHQKELPHQVINGFSMVNPYEVNAEKQAVQGAHPYHQFINMFSPGNGSTETVINTADADATETAAAEKIRRRMIKNRESAARSRARKLAYDAQQQIEIAKLKKENEFLRRIIRVLLTVIKKKRAQVTKLSRTFSEPP* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9101590 9103718 - Vvi19g716 Vvi19g716 782215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g716 251 Gene3D - 180 238 - -
Vvi19g716 251 SUPERFAMILY Leucine zipper domain 182 233 IPR046347 GO:0003700|GO:0006355
Vvi19g716 251 CDD bZIP_plant_BZIP46 182 236 - -
Vvi19g716 251 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 243 IPR004827 GO:0003700|GO:0006355
Vvi19g716 251 SMART brlzneu 178 242 IPR004827 GO:0003700|GO:0006355
Vvi19g716 251 Pfam Basic region leucine zipper 182 227 IPR004827 GO:0003700|GO:0006355
Vvi19g716 251 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 251 IPR043452 GO:0003700|GO:0045893
Vvi19g716 251 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Vvi19g716 251 PANTHER - 1 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g716 K14432 ABF; ABA responsive element binding factor - vvi:100249773 474.552
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14436 PF07716 bZIP_2 5.50E-10 CL0018 Vvi TF