Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g719 ATGGGAAGAAGAAAGGAGCGCCGCCTCGCCGCTATCAGCGCCTCCGGCCGCCGGGTTAAGCTTGATCTCTTCGCGGAACCCTCTGGAGATTTGGGTGGGTCCTCAGTACGAGATGAAGTTGGAGGAGATCTAGATTCAAAACGTCGTGCTGCATCACCCAATTCACCATCTTCTTCAGGTGGGTTCCGTCAGTTTTCTTCAAAAGGACTTTGTATAGAGGACATGACATTTGGAGATTACATCAGGGAAATTTTCCTTATCGGTCATAAAGTGGATAATTCATTGCTATTACTAGGGCAATATAGCGATGATGAATTGGAAGAGGGATCGAAGAAAAGAGTTACCTCTGCCGTCATGGAAAGTTCCTCAGCTGATCATAATGACCAGGTTAAGGGACTCATTGGCAGTGAAGATGTGGATATTAAAGCAGGTGAGCATATTGCTTCTCAGGAAGTTAAACAGCAGGACATGGAGAGAGATGGCACTTCACTAGATGCTCTCCAGAATCTGGAGGGCAGAGATATTAGAGAAAATGATGCGACTGCAGTAAGTGATTCATCCAAAGAAATGGATTTAGATGAACAAATCTATGTGCCTGGAAATCCTGGTGCCCAAGGCACTGGAGATGTGACTTTGGGCTGGAAGATGGTGATGCATGAGGAAAGTAACCAATGCTATTACTGGAATACTGAGACTGGGGAAACTTCATGGGAAGTACCTGATGTTTTGGTTCAGGCATCCCAATTAAACCCTGAACAGAAAACTCTTCCTGTTACTGAAGGAATGGAGAGTGCTTGTCTTGGACATGATGAAGTCAAGTCAACTTTAGATGTAGAATGTTCTGATTCCTCAGCTGTGCGTATTACTTGTGTCTCTGTGGGTGCCAATTTGATTTCTGAAACCAAAGAAAAGTACGCCTATGAAAGCATAGTTAACAAAGAACTTGAGACAGGAATTGATATTTCTTCTCGTCTTGTGGAACAAAGTGAAAGTTTGTTAGAAAAATTGATGACACTGAAAGGGTTAATGAGCCACCCGCAAGGTCATGATTTGACATCAAAGTATATTTGGGAACTTGAGATTAGAATTTCTGATTTTAAGTCACTTTTATCTTATGGATCATCCTTGCTTCCATTTTGGGAGCATTCTGAAAGGCAGATTAAGCGGCTGGAAGTTGCTGTTGATGATCAAATTTGTCAATTTGCTAAATATGCAGAGAATGAAGTTGACACACATATAAAGAGAGATAAATCACTGGAAAGCATGGTTGATGCATATGAAGCTGATGGAAATGAAAAGAAAGCAATGGCTCGGAAGCAAATGGTGGAAGAGTCGATGGAAATGACCTTTCTGATGAATTCACTTTCAAGCCTGGGCTCCATGCTGAGGAAGATGTGGACATGGACGTGGACATGGAAGTTGATGACACTCAATCTATTCAGCCAAATCTGCCTGTGGAATACTCATCCTTGGCTTCAGAGGATGGGTTTACTATTCCACCTCCTCCTGACAGCCGAAGCTGTTCCTTATACAGGGCAATATAATCTATCCTACCCAGATTCTAACTTCGACTATTATGGGCACACTGTTGCTGAAGTTCCAAGCAGTAGCTTTTATGGACTTGCTGAAGGACATCAAGTGGCAATGCCCCATCCACCAGTGTACTATGACACAGTTCCTAATGTGTATCTGGAGAATGCCCTAGTCATGGTTAACCCTGTTGAGCCTGGAGCATATTATGGAGTTCAGGATGGCATGGTGCCTCCTGTTGCTGTAGTGAGTAGTGTAGAATCTTCTGGGCTTCACAGTGGATCTGGTCCAGTTGATGTTCCAGCTGTTGGTTGTCATGCTGAAATGGCCTCTGCAGAGGTTGCTTTTAGTTCAGCCACAATTCAAGCACCAGCAACCATTTTGGTAAAAGAGAGTGCTCCTGTGCCGTCAACCAATGTGGTAACTGGTGCTCCTGCATCAACAGGTTCTAAGGCTCAATCTAAAGCTTCACGGACTGAAAAGCGGACCATAGGCATGACATCCTCATTGAGGTCTAATAAGAAAGTTTCCAGTTTGGTGGACAAGTGGAAGGCTGCAAAAGAGGAATTGCATGAGGATGAGGAATCTGAACCTGAAAACGGTTTTGAGATTTTAGAGAAGAAGCGGCAAAGGGCAATAGAGGAATGGCGTGCCCAGCAAATTGCCAGTGGGGAGGCTAAAGATAATGCTAATTTTCAGCCCTTGGGCGGTGATTGGCGTGAGAGGGTTAGGCGCAAGCGAGCTCGAAAGTCTAGTGAAGCTAAGAAGTCTTCACCTGAGCCAACCGCTTACAAAAGCCAGCAGCCTGATTTAGTGGAGCTGTCAAGAGATCTTCCGTCTGGATGGCAGGCGTATTGGGATGAATCCACAAAACTGGTCTACTATGGAAATGCGGTCACATCGGAGACGACCTGGACCAGACCTACAAATTGA 2463 44.58 MGRRKERRLAAISASGRRVKLDLFAEPSGDLGGSSVRDEVGGDLDSKRRAASPNSPSSSGGFRQFSSKGLCIEDMTFGDYIREIFLIGHKVDNSLLLLGQYSDDELEEGSKKRVTSAVMESSSADHNDQVKGLIGSEDVDIKAGEHIASQEVKQQDMERDGTSLDALQNLEGRDIRENDATAVSDSSKEMDLDEQIYVPGNPGAQGTGDVTLGWKMVMHEESNQCYYWNTETGETSWEVPDVLVQASQLNPEQKTLPVTEGMESACLGHDEVKSTLDVECSDSSAVRITCVSVGANLISETKEKYAYESIVNKELETGIDISSRLVEQSESLLEKLMTLKGLMSHPQGHDLTSKYIWELEIRISDFKSLLSYGSSLLPFWEHSERQIKRLEVAVDDQICQFAKYAENEVDTHIKRDKSLESMVDAYEADGNEKKAMARKQMVEESMEMTFLMNSLSSLGSMLRKMWTWTWTWKLMTLNLFSQICLWNTHPWLQRMGLLFHLLLTAEAVPYTGQYNLSYPDSNFDYYGHTVAEVPSSSFYGLAEGHQVAMPHPPVYYDTVPNVYLENALVMVNPVEPGAYYGVQDGMVPPVAVVSSVESSGLHSGSGPVDVPAVGCHAEMASAEVAFSSATIQAPATILVKESAPVPSTNVVTGAPASTGSKAQSKASRTEKRTIGMTSSLRSNKKVSSLVDKWKAAKEELHEDEESEPENGFEILEKKRQRAIEEWRAQQIASGEAKDNANFQPLGGDWRERVRRKRARKSSEAKKSSPEPTAYKSQQPDLVELSRDLPSGWQAYWDESTKLVYYGNAVTSETTWTRPTN* 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9136130 9146070 + Vvi19g719 Vvi19g719 782218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g719 820 MobiDBLite consensus disorder prediction 26 63 - -
Vvi19g719 820 ProSitePatterns WW/rsp5/WWP domain signature. 214 240 IPR001202 GO:0005515
Vvi19g719 820 CDD WW 213 241 IPR001202 GO:0005515
Vvi19g719 820 ProSiteProfiles WW/rsp5/WWP domain profile. 786 820 IPR001202 GO:0005515
Vvi19g719 820 SMART ww_5 209 242 IPR001202 GO:0005515
Vvi19g719 820 SMART ww_5 787 820 IPR001202 GO:0005515
Vvi19g719 820 PANTHER OS06G0298400 PROTEIN 1 442 - -
Vvi19g719 820 PANTHER OS06G0298400 PROTEIN 507 820 - -
Vvi19g719 820 Pfam WW domain 788 818 IPR001202 GO:0005515
Vvi19g719 820 Pfam WW domain 213 240 IPR001202 GO:0005515
Vvi19g719 820 Gene3D - 783 820 - -
Vvi19g719 820 Gene3D - 209 251 - -
Vvi19g719 820 ProSiteProfiles WW/rsp5/WWP domain profile. 208 242 IPR001202 GO:0005515
Vvi19g719 820 CDD WW 789 819 IPR001202 GO:0005515
Vvi19g719 820 ProSitePatterns WW/rsp5/WWP domain signature. 792 818 IPR001202 GO:0005515
Vvi19g719 820 MobiDBLite consensus disorder prediction 732 782 - -
Vvi19g719 820 SUPERFAMILY WW domain 787 819 IPR036020 GO:0005515
Vvi19g719 820 SUPERFAMILY WW domain 203 240 IPR036020 GO:0005515
Vvi19g719 820 MobiDBLite consensus disorder prediction 650 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g719 K24774 FNBP4; formin-binding protein 4 - vvi:100249836 731.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42