Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g72 ATGCGCAGCCATGAACGGACCTTCGTGTGGTTGAACATTCAAAGCTTCTCCTCTTTAAAAACCTCCTTTAAACCCCTCTCTCCCACTCATTCAATTCGGTGTAAAGCGAACCAGCCATTGCTACAGAGCGAATCCATGGATTCTTCGTCTCTTCTCCTCTTGTTGTTGCTGGGTTTCTTTTGTTCTTCTGAGTTCACATCCCATGCTCAACTTATTCCAAAAGATGAAGTGCAAACTCTTAGAACAATATTCAAAAAGCTAAACTACAAATATTGGAACATAAGCCAAGCTTCATGCAATCGAGATTTCAACCGAACCATCGATGATAATAGCTACAGCAATGTCACATGCAACTGTACCTTCAATGAAGGAACTGTTTGCCATGTCACAAACATCCAGCTGAAGGGTCTTGATTTGGATGGAACTTTACCTGATGAGTTTGGAGATCTTCCTTATCTGCAAGAACTTGATCTCTCCCGAAACTATATCAATGGATCGATCCCTACAAGTCTCAGTCGGCTTTCTCTTACCATTCTCGCTCTTGTTGGAAACAGAATCTCTGGGTCGATTCCTGAAGTAATCAGTAATATCAGTACACTTGAGGAGCTGGTCTTGGAAGCTAATCAGCTTGGAGAACATCTCCCTCCAAGTCTTGGAAAGTTGAGTCATTTAAGGAGACTTGTTCTTTCTGCAAACAATTTCATTGGAACAATACCAGAAAATTTTCACAATCTGAAGAACCTAACTGATTTTAGGATAGATGGGAATAATTTATCTGGGAAGATACCAGATTGGATTGGGAATTGGACCAACCTTGAGAAACTGTATCTGCAAGGCACATCAATGGACGGGCCCATTCCTTCTACTATATCCCAGTTGAAAAACTTAATCGAATTGTTAATATCTGATTTGAGTGGACCGACTACATCTTTCCCCAATTTGAAGGATATGAAAAACTTAAAAATATTGGTGATGAGAAATTGCTCCATTACAGGTGAAATCCCAAAAGACATTGGATATATTGAGAGTTTAAAACTTTTAGACCTGAGCTTCAACAGACTGAATGGTAAAATTCCAGAGAGCTTTAAGGAAGAAAAAGAGGACAGAGCAAAACTTAATTTCATGTTTCTCACCAACAACTCACTGACTGGAGAAGTGCCCAACTGGATAAGTTCGGACACTAAAAACAATATTGATTTATCTTACAACAATTTTACAGGGCCACTTCTTTGGTCTTACAAAAACCAAGTGAACTTGGTTTCAAGTTATGCATCTTCAGCAAGAGAGATGACCCCTTGGTTAAAGAAGGATCTCCCTTGCCCTCGAAAAGCCAAATACTATTCCTTGTATATCAATTGTGGAGGAGTGCAAACAACTTTTAAAAGGAAGGCATATGAAAAAGACGACAATGTTGAGGGTCCATCACAGTTCTTTACTGATAGTATAGACAAATGGGCTTATAGCAGTACAGGGGTTTTCATAGGTGATGAGGATGGTAGTCACCTAGCCAAAAACACATCTGCTTTGAACTCAGAGGATGCTGAGATCTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCGAAAGGGCATTTATAGACTGCGACTCTACTTCGCTGAAATCATGTTTTCTAATGACCAGACATTTGGTAGCCTTGGGAAACGCTTGTTCGATGTTTCAATTCAAGGGAATGTAGTTTTGAGGGATTTTAATATCATGGAAGAAGCTGAAGGTGCTGGTAAGGGCATTTATAAGGATTTTGAGGCTTCTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCAAAAAAAGGCGTATATGGACCTCTCATATCTGCTATCGCAGTGACAAATTCTGATCCCAACTTGGGGCTGTCTATTGGAGGTATTATCGGCATTGTGATAACTTCATGTATGGTCCTTGTATTGATTTTGGTACTCCTGCGAATGAAAGGCTACCTAGGAGGGAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGATGCAAACTGGTTATTTCAGTTTACGACAGATCAAAGCTGCAACAAATAACTTTGACTCTGCGAGTAAGATTGGTGAAGGTGGATTTGGGCCAGTTTACAAGGGTGTACTGTCAGATGGTTCAGTAATTGCTGTTAAGCAACTCTCTTCAAAATCGAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCTTGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTGTCGAAGGAAACCAGTTGTTGCTCATTTACGAATATTTGGAAAACAATAGTCTTGCACGTGCACTTTTTGGTTCCGAAGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGGGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGTATCTAAATGCTAAGATATCCGACTTTGGCTTGGCTAAGCTGGATGAAGACGAGAACACCCATATCAGCACGCGGATAGCTGGAACGATAGGATACATGGCTCCTGAATACGCAACGAGGGGTTACTTGACCGACAAAGCAGATGTTTACAGCTTTGGAGTTGTTGCTTTAGAGATTGTCAGCGGGAAAAGCAACGCCAATTATAGGCCAAAGCAAGAGTCTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAACCTTCTGGAGCTGGTGGATCCAAGTCTTGGATCAAACTACTCAGAGGAGGAGGTGATGGGGATGCTGAACTTGGCCCTCTTATGCACCAACCAGTCCCCCACTCTCAGGCCATCCATGTCCTCTGTAGTGAGTATGCTTGACGGCAAAATTGCAGTCCAAGCACCAACGATCAAGCATGATTCGATGAACCCGGATATGAGATTCAAAGCCTTTGAGAAGCTCTCACTGGACAGCCAGTCTCTTGTCTCAGCATTCTCTGTAGACAGTCAGGTCCAAGGCAGCATATCAGTTGATGGGCCATGGGCTGATTCCTCAATTTCCCTCCATAGCAGAGAAGAAACAAGGGGGTTTCCTTCATCAAGCAGGGTTCTTACAGGACACCAAGATCTTTACAATACACATTTGGACTGA 3192 42.01 MRSHERTFVWLNIQSFSSLKTSFKPLSPTHSIRCKANQPLLQSESMDSSSLLLLLLLGFFCSSEFTSHAQLIPKDEVQTLRTIFKKLNYKYWNISQASCNRDFNRTIDDNSYSNVTCNCTFNEGTVCHVTNIQLKGLDLDGTLPDEFGDLPYLQELDLSRNYINGSIPTSLSRLSLTILALVGNRISGSIPEVISNISTLEELVLEANQLGEHLPPSLGKLSHLRRLVLSANNFIGTIPENFHNLKNLTDFRIDGNNLSGKIPDWIGNWTNLEKLYLQGTSMDGPIPSTISQLKNLIELLISDLSGPTTSFPNLKDMKNLKILVMRNCSITGEIPKDIGYIESLKLLDLSFNRLNGKIPESFKEEKEDRAKLNFMFLTNNSLTGEVPNWISSDTKNNIDLSYNNFTGPLLWSYKNQVNLVSSYASSAREMTPWLKKDLPCPRKAKYYSLYINCGGVQTTFKRKAYEKDDNVEGPSQFFTDSIDKWAYSSTGVFIGDEDGSHLAKNTSALNSEDAEIYQTARLAPISLKYYGLCLRKGIYRLRLYFAEIMFSNDQTFGSLGKRLFDVSIQGNVVLRDFNIMEEAEGAGKGIYKDFEASVDGSTLEIHLYWTGKGTNSIPKKGVYGPLISAIAVTNSDPNLGLSIGGIIGIVITSCMVLVLILVLLRMKGYLGGKDLEDRELRELGMQTGYFSLRQIKAATNNFDSASKIGEGGFGPVYKGVLSDGSVIAVKQLSSKSKQGNREFVNEIGLISALQHPNLVKLYGCCVEGNQLLLIYEYLENNSLARALFGSEEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKYLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNANYRPKQESVYLLDWAYVLHEQGNLLELVDPSLGSNYSEEEVMGMLNLALLCTNQSPTLRPSMSSVVSMLDGKIAVQAPTIKHDSMNPDMRFKAFEKLSLDSQSLVSAFSVDSQVQGSISVDGPWADSSISLHSREETRGFPSSSRVLTGHQDLYNTHLD* 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 813602 825355 + Vvi19g72 Vvi19g72 781571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g72 1063 Gene3D Ribonuclease Inhibitor 202 306 IPR032675 -
Vvi19g72 1063 SUPERFAMILY L domain-like 100 422 - -
Vvi19g72 1063 SUPERFAMILY Protein kinase-like (PK-like) 685 986 IPR011009 -
Vvi19g72 1063 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 107 1036 - -
Vvi19g72 1063 ProSiteProfiles Protein kinase domain profile. 702 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g72 1063 Gene3D Ribonuclease Inhibitor 307 428 IPR032675 -
Vvi19g72 1063 Pfam Leucine rich repeat 222 280 IPR001611 GO:0005515
Vvi19g72 1063 Pfam Malectin domain 448 630 IPR021720 -
Vvi19g72 1063 Pfam Leucine Rich Repeat 343 363 IPR001611 GO:0005515
Vvi19g72 1063 CDD STKc_IRAK 708 975 - -
Vvi19g72 1063 Gene3D - 444 636 - -
Vvi19g72 1063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Vvi19g72 1063 Gene3D Transferase(Phosphotransferase) domain 1 778 987 - -
Vvi19g72 1063 PANTHER - 107 1036 - -
Vvi19g72 1063 Gene3D Ribonuclease Inhibitor 76 199 IPR032675 -
Vvi19g72 1063 SMART serkin_6 702 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g72 1063 Gene3D Phosphorylase Kinase; domain 1 673 777 - -
Vvi19g72 1063 Pfam Protein tyrosine and serine/threonine kinase 705 973 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g276 Vvi19g72 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76476 PF07714 PK_Tyr_Ser-Thr 4.30E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g72 - - vvi:100250347 2067.74