Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g722 ATGGCGGAGGTTGAAACGTTCGCTTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGATGGACAACCTGACCTCTTCATCCACATTGTCCCTGATAAGACAAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCATGGAAGCCCTGGCTGCTGGTGCTGATGTTAGCATGATTGGGCAGTTTGGTGTTGGGTTTTACTCAGCCTACCTGGTTGCTGAGAAGGTCATTGTAACCACCAAGCACAATGATGATGAGACCAGCTCGAGTACCTTGAGGAGCGTCGAGTCAAGGATTTGA 477 46.33 MAEVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPDLFIHIVPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDETSSSTLRSVESRI* 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9160944 9162797 - Vvi19g722 Vvi19g722 782221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g722 158 Gene3D - 1 157 IPR036890 -
Vvi19g722 158 CDD HATPase_Hsp90-like 14 146 - -
Vvi19g722 158 PANTHER BNAA02G35440D PROTEIN 1 146 - -
Vvi19g722 158 SMART HKATPase_4 27 157 IPR003594 -
Vvi19g722 158 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi19g722 158 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 146 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi19g722 158 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Vvi19g722 158 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Vvi19g722 158 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Vvi19g722 158 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Vvi19g722 158 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Vvi19g722 158 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 142 IPR003594 -
Vvi19g722 158 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4 146 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g722 K04079 HSP90A, htpG; molecular chaperone HtpG - vvi:100261759 281.567
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g722 . . . . Bpe09g00109 Bpe08g01086 . . Cmo16g01031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00880 Bda05g00671 Bda12g00984 . Bpe03g00745 Bma07g01240 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102