Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g725 ATGCCTGCAACTCTAAGGAATCTCTTGCTTTCTCCCAATATCTTCTCCTTCTCCTTTACCTTCCTTCTCTCAATAAACTCTCTTTTCTTCTCCTGTTGTTTCTCCATTGATGAACAGGGCCAAGCTCTTTTAACATGGAAGAACGGTTTAAACAGCTCTACAGATGTGCTGAGGTCATGGAATCCTTCAGACCCCAGTCCATGCAACTGGTTTGGGGTTCATTGCAACCCAAATGGAGAAGTAGTTCAGATAAGCTTGAGATCAGTAGACTTGCAGGGCCCATTGCCTTCAAATTTTCAGTCTCTCAATTCCTTGAAGAGCCTTATCCTCCCATCAGCCAATCTCACCGGCACAATTCCGAAAGAGTTTGGAGAATACCGTGAACTGGCTCTCATCGATCTTAGTGGCAATTCAATCACAGGCGAAATCCCAGAGGAGATTTGCAGGCTGAGCAAACTGCAAAGTTTATCCCTTAATACAAATTTTCTGGAAGGGGAAATTCCTTCCAACATTGGGAACCTCTCAAGTCTTGTGTACCTGACACTATACGACAATCAACTGAGTGGCGAAATTCCAAAGAGTATTGGAGAATTAACCAAGCTAGAAGTTTTCCGAGCTGGTGGTAATCAAAATCTCAAAGGTGAGCTACCATGGGAGATTGGAAACTGCACAAACTTGGTTATGATAGGCCTTGCAGAGACCAGCATTTCTGGAAGTCTTCCTTTGTCAATTGGGATGCTGAAGAGAATCCAAACCATTGCCATTTATACTGCTCTATTGTCGGGTCCCATCCCACAAGAGATTGGAAACTGCAGTGAGTTGCAGAATCTGTACTTGTATCAGAATTCCATCTCCGGTCCAATCCCCAGGGGAATTGGGGAGCTTGCAAAGCTTCGGAGTCTACTGTTGTGGCAGAACAGCTTTGTGGGTACAATACCATCTGAAATAGGAGCCTGCTCTGAGCTCACAGTGATTGACTTATCGGAGAATCTTCTGTCAGGCAGCATACCAGGAAGTTTTGGAAACCTTTTGAAGCTTCGGGAACTTCAACTGAGCGTTAATCAGTTATCAGGCTTCATACCTTCTGAAATCACAAACTGCACAGCTCTGAATCATCTTGAAGTTGACAACAACGACATTTCTGGTGAGATTCCGGTTCTTATCGGCAACTTGAAGAGCTTGACTCTGCTCTTCGCCTGGCAGAATAAGCTTACAGGCAGTATTCCAGAGAGCCTTTCCAATTGTGAGAATCTTCAGGCCCTTGATCTGTCATACAATCACCTCTCTGGTTCAATCCCAAAACAGATTTTTGGATTGAAAAACCTCACCAAGTTTCTTGATCTTCACTCAAATGGGCTCATTAGTTCTGTGCCTGATACGCTGCCCATAAGCCTACAGCTTGTGGACGTATCAGACAATATGCTTACAGGTCCGCTGACTCCGTACATTGGGTCACTAGTTGAACTAACCAAACTCAACCTGGGGAAGAATCGACTTTCGGGGACAATCCCAGCTGAGATCCTTTCCTGCAGTAAGCTACAATTGTTAGATCTCGGAAACAATGGCTTCTCCGGTGAAATTCCGAAGGAATTGGGTCAACTTCCAGCGCTGGAAATCTCTCTCAACCTTAGCTGCAACCAGCTTACAGGCGAAATCCCAAGCCAGTTCTCTAGCCTTAGCAAGCTGGGGGTCCTTGATCTCTCTCATAACAAGCTCACTGGGAATTTGAATATCCTCACGAGCCTCCAAAATCTAGTTTTCCTCAATGTCTCCTATAATGACTTCTCCGGTGAACTGCCTGATACCCCATTCTTTCGGAACCTCCCCATGAGTGACCTTGCTGGAAATCGAGCTCTCTACATCTCCAATGGGGTTGTGGCCCGGGCCGACAGCATAGGCCGTGGCGGGCACACCAAGTCGGCAATGAAGCTGGCCATGTCCATCCTCGTTAGCGCCAGTGCAGTACTGGTACTACTTGCAATTTACATGCTAGTTCGTGCCCGTGTCGCCAACAGGCTCTTAGAAAATGATACTTGGGATATGACTTTGTACCAGAAGCTGGATTTCTCCATTGATGACATAATCCGGAACCTAACATCAGCTAATGTGATCGGGACGGGAAGCTCTGGAGTGGTATACAGGGTGGCAATTCCAGATGGACAAACACTCGCAGTGAAGAAGATGTGGTCATCAGAAGAGTCGGGAGCATTCAGTTCTGAAATTCGGACACTGGGCTCGATCCGGCACCGGAATATTGTGAGACTTCTGGGATGGGGATCAAACCGGAGCCTGAAACTGCTGTTCTACGATTACCTTCCCAATGGAAGCTTGAGCTCGCTCCTTCATGGTGCGGGAAAGGGAGGGGCAGACTGGGAGGCAAGGTATGATGTTGTGCTGGACGTGGCACACGCCGTTGCTTATTTGCACCATGACTGTGTGCCTGCAATCTTGCATGGGGATGTGAAAGCCATGAACGTGTTGTTGGGTCCTAAGCTTGAAGCTTATCTTGCTGATTTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAACCTTGCCTGGGGGTGCACACTTGGTTCAGTGGGTTCGTGATCATTTGTCGAAAAAGCTGGACCCAGTTGACATTCTTGATCCAAAGCTTAGGGGGAGGGCTGACCCTCAGATGCATGAAATGCTCCAAACGCTAGCAGTTTCATTTCTCTGTATCAGCACCCGAGCCGAGGATCGTCCAATGATGAAGGATGTTGTGGCAATGCTCAAGGAAATTCGACAAGTCGATGCTCTAAGGGCAGAGACTGACTTGTTGAAGGGGGATTTGTCGACTCTACCTTCATCTCCTCCTACTCACAACATGGTTCTGCAAGGATCTTCTAACTGTTCCTTTGCTTTCTCTGATGAAATTTATTGCAAGGAATGA 3078 46.98 MPATLRNLLLSPNIFSFSFTFLLSINSLFFSCCFSIDEQGQALLTWKNGLNSSTDVLRSWNPSDPSPCNWFGVHCNPNGEVVQISLRSVDLQGPLPSNFQSLNSLKSLILPSANLTGTIPKEFGEYRELALIDLSGNSITGEIPEEICRLSKLQSLSLNTNFLEGEIPSNIGNLSSLVYLTLYDNQLSGEIPKSIGELTKLEVFRAGGNQNLKGELPWEIGNCTNLVMIGLAETSISGSLPLSIGMLKRIQTIAIYTALLSGPIPQEIGNCSELQNLYLYQNSISGPIPRGIGELAKLRSLLLWQNSFVGTIPSEIGACSELTVIDLSENLLSGSIPGSFGNLLKLRELQLSVNQLSGFIPSEITNCTALNHLEVDNNDISGEIPVLIGNLKSLTLLFAWQNKLTGSIPESLSNCENLQALDLSYNHLSGSIPKQIFGLKNLTKFLDLHSNGLISSVPDTLPISLQLVDVSDNMLTGPLTPYIGSLVELTKLNLGKNRLSGTIPAEILSCSKLQLLDLGNNGFSGEIPKELGQLPALEISLNLSCNQLTGEIPSQFSSLSKLGVLDLSHNKLTGNLNILTSLQNLVFLNVSYNDFSGELPDTPFFRNLPMSDLAGNRALYISNGVVARADSIGRGGHTKSAMKLAMSILVSASAVLVLLAIYMLVRARVANRLLENDTWDMTLYQKLDFSIDDIIRNLTSANVIGTGSSGVVYRVAIPDGQTLAVKKMWSSEESGAFSSEIRTLGSIRHRNIVRLLGWGSNRSLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYDVVLDVAHAVAYLHHDCVPAILHGDVKAMNVLLGPKLEAYLADFGLARVVNNSGEDDFSKMGQRPHLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLVQWVRDHLSKKLDPVDILDPKLRGRADPQMHEMLQTLAVSFLCISTRAEDRPMMKDVVAMLKEIRQVDALRAETDLLKGDLSTLPSSPPTHNMVLQGSSNCSFAFSDEIYCKE* 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9194801 9198616 + Vvi19g725 Vvi19g725 782224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g725 1025 Gene3D Ribonuclease Inhibitor 190 288 IPR032675 -
Vvi19g725 1025 SUPERFAMILY Protein kinase-like (PK-like) 688 973 IPR011009 -
Vvi19g725 1025 SMART serkin_6 698 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g725 1025 SMART LRR_typ_2 559 589 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 343 367 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 295 319 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 534 558 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 150 173 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 486 510 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 416 439 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 391 415 IPR003591 -
Vvi19g725 1025 SMART LRR_typ_2 174 198 IPR003591 -
Vvi19g725 1025 PRINTS Leucine-rich repeat signature 418 431 - -
Vvi19g725 1025 PRINTS Leucine-rich repeat signature 559 572 - -
Vvi19g725 1025 SUPERFAMILY L domain-like 264 615 - -
Vvi19g725 1025 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524
Vvi19g725 1025 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vvi19g725 1025 Gene3D Ribonuclease Inhibitor 387 623 IPR032675 -
Vvi19g725 1025 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 401 1019 - -
Vvi19g725 1025 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 446 - -
Vvi19g725 1025 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 446 - -
Vvi19g725 1025 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 401 1019 - -
Vvi19g725 1025 SUPERFAMILY L domain-like 35 316 - -
Vvi19g725 1025 ProSiteProfiles Leucine-rich repeat profile. 561 583 IPR001611 GO:0005515
Vvi19g725 1025 Pfam Leucine rich repeat 540 595 IPR001611 GO:0005515
Vvi19g725 1025 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Vvi19g725 1025 ProSiteProfiles Protein kinase domain profile. 698 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g725 1025 Gene3D Ribonuclease Inhibitor 289 386 IPR032675 -
Vvi19g725 1025 Gene3D Ribonuclease Inhibitor 38 189 IPR032675 -
Vvi19g725 1025 Gene3D Phosphorylase Kinase; domain 1 665 771 - -
Vvi19g725 1025 Pfam Protein kinase domain 701 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g725 1025 Gene3D Transferase(Phosphotransferase) domain 1 772 990 - -
Vvi19g725 1025 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Vvi19g725 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76477 PF00069 Pkinase 1.50E-36 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g725 - - cic:CICLE_v10007329mg 1557.73