Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g726 ATGATGAAAAAAGAGTATAAAAAAAAAATCCTAAAACTCACCCGTTTTCTAAATAGCAACGCAGCAAGAGTGGTGTGCACTGTGGAGGACGCTCCGTTTGAATCAACGGGCCCTTACCGTGGGTTTACATCGAGTTTTTTTGCTTCGACTTTGAAATTGATACTGAATATGTCGACGTTTCTTGGAAATTTCAGCTGCAAATTTTCATTCCAGTTTCAGTATCGACCTTTTTTCATTGCCTGGATGACAAAGAACAATGCCCTTTGCTGTATGAAGAACAGAGCTTACGGCTCTGTTCCGGTTAGGTACATTCCTAAGAAGTCTTATAAGGTCGAGGATTCAAAATCTTTGAAGAGTTCTGAGGATGAAGAAATTCAGGATTGTGTTCGAATTCGGGCTTCAGATGGTGGGCGAAGTTATCGGACAACTTTTGCTTGGGATGAGAAGAATAAAATTCAGGATAAAAGGCCTATGAACAATTTGATATTTGATGCTGAATCAGAATCAGAAGATGCTATTGATTGTGATGTTAGGGTTGTAGACTTTGAGTTCATGCAAGAGCCAGAGGATGTTGTCAAGGAATTCAGAATCTATCAAGAGAAGGATTATCCTGAATTGGATGTATCACAAGTTAGTAAAAGTAAACAAGATGCTGAGAAGTTGGCAATTGAATTACTTGCAACAAGGGCATACACAGCAGTTGAGTTGAAAAAGAAACTGCATGGAAAGAGAGTTGCTTGTGATATTACTGAAGCTGTGATAAATGACTTCCAAAGCAGAGGGTTGATCAATGATGCGTTGTATGCGGAAACATTTTCTCGATCTAGATGGTCTTCTTCAAGTTGGGGGCCTAGACGGATCAAGCAAGCACTGTTCAAGAAGGGAGTAAGTGAAGCTGATGCAGAGAAGGCAGTAAAACTAGTTTTCAAGGATGATGGATCTGGTGGAGATCAAGAGTCAAGACATGGTTTGTCAAATCTTGCGATGGATCATCTATTTGTTCAGGCCTCAAAGCAATGGTTGCGAGGTCATGATGTGCCCAGAGAAACACGGAAATCCAGGATTATTCGGTGGCTTCAGTATCGTGGATTCACTTGGGCTGTTGTTAGCTTCATATTGAAGAAGTTAGAATCTCAGTATCCTCACTAG 1149 40.56 MMKKEYKKKILKLTRFLNSNAARVVCTVEDAPFESTGPYRGFTSSFFASTLKLILNMSTFLGNFSCKFSFQFQYRPFFIAWMTKNNALCCMKNRAYGSVPVRYIPKKSYKVEDSKSLKSSEDEEIQDCVRIRASDGGRSYRTTFAWDEKNKIQDKRPMNNLIFDAESESEDAIDCDVRVVDFEFMQEPEDVVKEFRIYQEKDYPELDVSQVSKSKQDAEKLAIELLATRAYTAVELKKKLHGKRVACDITEAVINDFQSRGLINDALYAETFSRSRWSSSSWGPRRIKQALFKKGVSEADAEKAVKLVFKDDGSGGDQESRHGLSNLAMDHLFVQASKQWLRGHDVPRETRKSRIIRWLQYRGFTWAVVSFILKKLESQYPH* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9199157 9208791 - Vvi19g726 Vvi19g726 782225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g726 382 Gene3D - 326 382 IPR036388 -
Vvi19g726 382 PANTHER REGULATORY PROTEIN RECX FAMILY PROTEIN 67 381 IPR003783 GO:0006282
Vvi19g726 382 Hamap Regulatory protein RecX [recX]. 200 380 IPR003783 GO:0006282
Vvi19g726 382 Gene3D - 218 262 IPR036388 -
Vvi19g726 382 Pfam RecX family 246 375 IPR003783 GO:0006282
Vvi19g726 382 Gene3D - 264 307 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g726 - - - vvi:100251420 643.269
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g726 . . . Bda09g00446 . Bpe08g01083 . . . . . . . Car09g00938 Sed07g2766 Cpe06g00840 . Bhi09g01817 Tan01g3232 Cmetu01g0567 . . Mch11g1311 . . . . . . . . . . . . Lsi02g01802 Csa07g01063 . . . . . . . . Bma07g01238 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013129 1 2 0 1 1 1 1 0 1 1 0 0 0 1 1 0 0 1 1 0 1 2 1 1 1 1 1 4 1 1 27