Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g727 ATGGAAAATTTGAATGCTCATTCACAACACACGAGAATCCTATTTCACCTTCCCGTCTCTCTGTGTGAGATTGGATCTACTCTCCTCTACTCCACTCTCATTTCCGCCATACACTCGCCGGAGCTCCTCAGGCTTGCTTTTCATAGAATTGTGAGGAGTATTGTCGAGGAAGAGAAGATGCCGCAAGAGACTAACTGTAATTCAATTTTCTCGTCTCCGGGGAAGAGTTTGAGAGGATTGAAGAGCTTGGCTTCCAACAATGAGGCTGCCGGCTATGTTGAAGAGATCATCAATGATCATGAATTGGCCCATAGAAAAGCTGAAGAAGCAGCTTCAAGGAGGTACCAAGCAGCGGAATGGCTGAGGCAGATGGACCAGGGTGCATGGGCAGCACTGCCCAAAGACCCATCAGAAGAAGACTTCTGTCTCGCTCTCCGCAATGGCCTCATTCTTTGCAATGTCCTCAACAAAGTCAATCCTGGCGCTGTTCTCAAGGTGGTGGAGAACCCCATCATCGCTGTCCAGTCCACTGAAGCTGCTGCCCAGTCTGCAATTCAGTACTTTGAGAACATGAGGAATTTTCTGGTTGCTGTTGGGGCCATGAAGCTCTTGACTTTCGAAGCTTCCGATTTGGAGAAGGGAGGCTCATCAAGTAAAGTTGTTGATTGCATTCTCTGTCTGAAAGGCTATTATGAGTGGAGGCAAGCAGGGGGAATTGGGGTTTGGAGGTATGGGGGGACCGTAAGGATCACATCCCTCCCGAAGGAATCACCATCCTCCTTGGTTGGCAGTGAAAGTGCTGATGAGTCATTGGATGAATCTGAATCGTCTCAATATGAGCAGCTATTAGAATATCTCCATCTTTCTAGTGAGGTCTCAACAGAAGGATCCAAAGCAGCTGATGCTCTGACATTTCTGTTTGATCGTTTTGGTCTTGGACTTCTACAGGCTTATCTTACTGACAAGAATGGAATTGAAGACTGGCCTTTGAATGAAATGGTCATTGATACTTTGCTCAGGAAGGTAGTTGAGGATTTTTCAGGGCAAATTGTTTCTCAGTACAATCAGCTTGGAATGATTTTGAAGAAAATTCTGAAAGGTGACACTATTCCTCTATCAAAACATGAATTCCTAGAAGCCATTACACAATATCTTGATAAGAAAAATAGTTTGGCATTGAGTAATCTCTCCAAATTCTGCATCTGTGGAGGGAAACGAGAGGTGGTCAGGCATAGCAATAATCTGTCTGCTGATCACGCACAACTACTCAATCTCCATCAGAGACAGGTCCAGGAGCTAAAATCATTTTTTCATGAGACAAAACTAGAAGTTAAACAGATTCAATCCAACTGGGATGAAGAAGTTAGAAGACTTGTGTACCATGTTAAAGGACTTGAGGTAGCTGGGTCTTCCTATCAGAAGGTTTTAGAGGAGAACCGCCTGCTTTACAATCAAGTTCAAGACCTGAAAGGAACCATAAGGGTTTACTGTAGGGTGAGGCCCTTCTTACCAGGTCAATCAAATGGGCAGTCTACAGTAGAATATATTGGAGAAAATGGAAATATCATGATTGTCAATCCTCTCAGGCAAGGAAAAGATGCAAGAAAGGTGTTTTCATTCAACAAAGTTTTTGGGACAAATGTGACACAAGAGCAAATATATGAAGACACTCAACCATTGGTCAGATCTGTTCTAGATGGTTTTAATGTTTGCATTTTTGCATATGGGCAGACAGGCTCAGGGAAGACGTACACAATGAGTGGACCTGATTTAACAACTCAGGAGACATGGGGCGTAAATTATCGGGCTCTGCGTGACTTATTCCAAATCTCAAAAGCAAGGGTGGATGCCATAGAATATGAAGTTGGAGTCCAAATGATTGAGATATACAACGAACAAGTCAGAGATCTATTAGAATCAACTTCACATATTTATTTCAATTCCTTAACTACCTGCACATTAGATATCCGGAACAATTCTCAATTGAATGGCCTTAATGTGCCTGACGCAAGTTTACTTCCAGTTACATGTACTCAAGATGTTCTTGAGTTGATGAGAATTGGCCAAAGGAATCGTGCTGTGGGTGCTACTGCTTTAAATGAGCGAAGTAGCCGTTCTCATAGTGTGTTAACAGTTCATGTCCAGGGAAGGGAGTTGGTTTCTGGATCCATTCTTAGGGGCTGCCTCCATCTAGTTGATCTGGCAGGAAGTGAGAGAGTAGATAAATCTGAGGCCGTTGGTGAAAGACTGAAAGAAGCCCAACATATAAATAGATCTCTTTCAGCACTTGGAGATGTCATCTCTGCTCTTGCTCAGAAGAGTCCACATATTCCTTATAGGAACAGCAAGCTTACTCAAGTATTGCAAGACTCTTTAGGCGGGCAAGCGAAAACATTGATGTTTGTACATATAAATCCTGAAGTTAATGCTATTGGAGAAACAATTAGCACACTCAAGTTTGCAGAGAGGGTCTCCTCCATAGAACTTGGGGCAGCTCGATCTAACAAAGAAACTGGTGAAATCCGAGATCTTAAAGAAGAGATTTCAAACCTTAAACTGACAATGGAGAGGAAAGAAGCTGAATTGGAACAACTGAAAGGTGCAAACACCCGAAGCACCACGGAAGCACAAAAACCAAGAGTAGTTTCACCTTTCCGAATGCCTAGATATGGTAGTAATGCCAGCTTGAAGCCTGAAATCTGTCAGCGACCCATTGATGACACTAGAAGCTCTGAGGCTAGAAGCTGTTCTTCAGGTAAGCAGAGGAGGTTGCGGTTTCCCTCTGCTTTCACAGACAAAGAGCTGGTCCCAAAGATGCCTTTTCTAGCTGACGAAAAATTAGCAAGCTCTGGAAAGCCAAGGATCAACTCAAGGAAAGTTCACCCAGAACATGAAGAGGAGCAGTTTAAGCATGCTCTTAATGTAAGGCAAGGTGGTGTTAGGAAAAACAAGCCTGAGAATAAGGCTAAAGCTAAGTATCAAATGCCAGTTAAGATCCAGAAATCTGAAGTAGCTCCAACATCACTTTCTGATACGGATTCTAGTGGAAAGATGGAAGAGGCTAGAAAAAGTGACTTTTCTGAGCCAGAAAATGAGCATGGACTTGTTGGGTCAACTTTCCAGGGTGCTTTGAGGGTGAAAAAGCTTCACAACTTCTCAAGGAATTCCCAGAATCTTGAACCAAGAGGACTAGTGCAGGCAGTAGAACCCTTGCTGGCTGGGAAACATGAAAACAAACTCCCACACGGTGTGGTCCGCTATCTAAAAGAAGGCAGCAACACATCAATGCCTGAATTCAGAAGGAGCCGGTCCTCTCCTCGTGGAAAATTGATGATTCTACCTTGA 3345 43.5 MENLNAHSQHTRILFHLPVSLCEIGSTLLYSTLISAIHSPELLRLAFHRIVRSIVEEEKMPQETNCNSIFSSPGKSLRGLKSLASNNEAAGYVEEIINDHELAHRKAEEAASRRYQAAEWLRQMDQGAWAALPKDPSEEDFCLALRNGLILCNVLNKVNPGAVLKVVENPIIAVQSTEAAAQSAIQYFENMRNFLVAVGAMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWRQAGGIGVWRYGGTVRITSLPKESPSSLVGSESADESLDESESSQYEQLLEYLHLSSEVSTEGSKAADALTFLFDRFGLGLLQAYLTDKNGIEDWPLNEMVIDTLLRKVVEDFSGQIVSQYNQLGMILKKILKGDTIPLSKHEFLEAITQYLDKKNSLALSNLSKFCICGGKREVVRHSNNLSADHAQLLNLHQRQVQELKSFFHETKLEVKQIQSNWDEEVRRLVYHVKGLEVAGSSYQKVLEENRLLYNQVQDLKGTIRVYCRVRPFLPGQSNGQSTVEYIGENGNIMIVNPLRQGKDARKVFSFNKVFGTNVTQEQIYEDTQPLVRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLTTQETWGVNYRALRDLFQISKARVDAIEYEVGVQMIEIYNEQVRDLLESTSHIYFNSLTTCTLDIRNNSQLNGLNVPDASLLPVTCTQDVLELMRIGQRNRAVGATALNERSSRSHSVLTVHVQGRELVSGSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGQAKTLMFVHINPEVNAIGETISTLKFAERVSSIELGAARSNKETGEIRDLKEEISNLKLTMERKEAELEQLKGANTRSTTEAQKPRVVSPFRMPRYGSNASLKPEICQRPIDDTRSSEARSCSSGKQRRLRFPSAFTDKELVPKMPFLADEKLASSGKPRINSRKVHPEHEEEQFKHALNVRQGGVRKNKPENKAKAKYQMPVKIQKSEVAPTSLSDTDSSGKMEEARKSDFSEPENEHGLVGSTFQGALRVKKLHNFSRNSQNLEPRGLVQAVEPLLAGKHENKLPHGVVRYLKEGSNTSMPEFRRSRSSPRGKLMILP* 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9229429 9239572 - Vvi19g727 Vvi19g727 782226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g727 1114 ProSiteProfiles Calponin homology (CH) domain profile. 111 232 IPR001715 GO:0005515
Vvi19g727 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 863 IPR027417 -
Vvi19g727 1114 MobiDBLite consensus disorder prediction 999 1036 - -
Vvi19g727 1114 PANTHER KINESIN-LIKE PROTEIN KIN-14F 84 954 - -
Vvi19g727 1114 PANTHER KINESIN-LIKE PROTEIN KIN-14F 955 1108 - -
Vvi19g727 1114 SMART kinesin_4 490 835 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g727 1114 ProSiteProfiles Kinesin motor domain profile. 492 827 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g727 1114 MobiDBLite consensus disorder prediction 1090 1114 - -
Vvi19g727 1114 MobiDBLite consensus disorder prediction 1015 1030 - -
Vvi19g727 1114 Gene3D - 102 232 IPR036872 -
Vvi19g727 1114 PRINTS Kinesin heavy chain signature 567 588 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g727 1114 PRINTS Kinesin heavy chain signature 697 714 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g727 1114 PRINTS Kinesin heavy chain signature 728 746 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g727 1114 PRINTS Kinesin heavy chain signature 777 798 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g727 1114 MobiDBLite consensus disorder prediction 254 273 - -
Vvi19g727 1114 Pfam Calponin homology (CH) domain 113 232 IPR001715 GO:0005515
Vvi19g727 1114 PANTHER KINESIN-LIKE PROTEIN KLP-3 955 1108 - -
Vvi19g727 1114 PANTHER KINESIN-LIKE PROTEIN KLP-3 84 954 - -
Vvi19g727 1114 Pfam Kinesin motor domain 498 827 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g727 1114 Gene3D Kinesin motor domain 435 829 IPR036961 -
Vvi19g727 1114 Coils Coil 834 875 - -
Vvi19g727 1114 SMART ch_5 113 230 IPR001715 GO:0005515
Vvi19g727 1114 SUPERFAMILY Calponin-homology domain, CH-domain 105 260 IPR036872 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g727 K10406 KIFC2_3; kinesin family member C2/C3 - vvi:100241162 1812.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36