Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g728 ATGTCAGGACTAGAAGAAGGACTGGGGGCTCAAGATGAAATAAGAGAAAGAAGATCAGATTTGGAGAACTCAGAAGATGAGAGACGGAGATCAAAAATTGCCCATCTCAAGAAGAAGGCAATAAATGCTTCGAATAAGTTTACTCATTCTCTTAAGAAACGAGGAAAAAGGAAAATAGACTACAGAGTTCCTTCTGTTTCCATAGAGGATGTACGAGATGCAAAAGAGGAGAGTGCCGTTCATGAATTGCGTCAAAAACTCCTTGACAAGGATTTGTTGCCACCTAGGCATGATGACTATCATACTTTGCTGAGATTCTTGAAAGCTAGAGAATTTAACATTGAAAGAACGATCCAGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAACGGACACAATTCTGGAGGACTTTGAATTCAAAGAGCTGGAGGATGTCTTACAATACTACCCTCAAGGATACCATGGAGTTGATAAGGAAGGAAGGCCAGTTTACATTGAGAGACTTGGGAAAGCTCACCCCAGTAGGCTTATGCGTATCACCACAATAGATCGCTACTTAAAGTACCATGTCCAAGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGGGTATGAAAAATTTTACTCGAACTGCTGCAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAGACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGGTGCTGGAGCCCAAATTCTTATGTAAACTTCTGGAAGTCATTGACTCAAGTCAACTGCCTGACTTCTTGGGTGGCTCTTGCACATGTGCTACTGATGGTGGGTGCCTGAGGTCTAATAAAGGTCCATGGAATGATCCTGAAATAATGAAGCTTGTGCATAATGCGGAATCAATATTTGTGAGGCAAATCACCAGAATAGTTAATGACCAACAGAAACTCGACTCATATATTCAGATACGCCCTCTGAAGGGGAGAGGTAGTGATACAATGACAGTAGAATCAGGATCAGATGTTGATGATCCTTGTTCTCCAACAGGACAAAGGAGCTCTTCATTTCCACGATTGGCCCCTGTTCATGAAGAAGCCAGGGCATCAGATCCCAATTCTTATTACAGCTGTGATGATCATTTTGGTCTGGTTGATGAAGCTACTGGCTACGATCAGGAAGTGGGACATACTCAGGGCCAATCGCTTAATGATATGGGAAATTCTTCTAGTGGGAAAATATCAAATTCAGGAGGTATTCCAGTCAACCGAAGGTCCAATACTGTCAAGGAAAAGGTGGAGAACAGGAATTTTCAGTTTTTGGCAAGAATGCTGATATCTTTCCTGGTTAGGCTGGTTGCATTTATTCGTAGTTTTCCCTTTGAATTTTGGAGAAGGCAGAGCAACATTTATCCATCTAATGTGATGGAAGACAACCAAAACAGCTGTTCAGGAGCTGACGAAACTGTCTACAAAGAAGACCCTATCCTTCCATGCATACAGCGCCTTCAGAGCATAGAGAAAAAATTTGAGGAACTTAGGAACAAGCCTGCTGAAATTCCTTTTGAAAAGGAGCAAATTCTTCTTGAATCTTTGGATAGAATCAAGTCTGTTGAGTTTGACCTTGAGAAAACAAAGAGAGTACTTCATGCTACAGTGATGAAGGAACTTGAGATTGCTGAGCTTCTGGAGAATTTACGACAGTCTAAGTTTCGACGAAGAAGGCTCTTCTGTTAA 1866 41.48 MSGLEEGLGAQDEIRERRSDLENSEDERRRSKIAHLKKKAINASNKFTHSLKKRGKRKIDYRVPSVSIEDVRDAKEESAVHELRQKLLDKDLLPPRHDDYHTLLRFLKAREFNIERTIQMWEEMLNWRKEYGTDTILEDFEFKELEDVLQYYPQGYHGVDKEGRPVYIERLGKAHPSRLMRITTIDRYLKYHVQEFEKALLEKFPACSIAAKRRICSTTTILDVQGLGMKNFTRTAANLVAAMAKIDNNYYPETLHRMFVVNAGPGFKKMLWPAAQKFLDPKTISKIQVLEPKFLCKLLEVIDSSQLPDFLGGSCTCATDGGCLRSNKGPWNDPEIMKLVHNAESIFVRQITRIVNDQQKLDSYIQIRPLKGRGSDTMTVESGSDVDDPCSPTGQRSSSFPRLAPVHEEARASDPNSYYSCDDHFGLVDEATGYDQEVGHTQGQSLNDMGNSSSGKISNSGGIPVNRRSNTVKEKVENRNFQFLARMLISFLVRLVAFIRSFPFEFWRRQSNIYPSNVMEDNQNSCSGADETVYKEDPILPCIQRLQSIEKKFEELRNKPAEIPFEKEQILLESLDRIKSVEFDLEKTKRVLHATVMKELEIAELLENLRQSKFRRRRLFC* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9245111 9251543 - Vvi19g728 Vvi19g728 782227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g728 621 MobiDBLite consensus disorder prediction 377 400 - -
Vvi19g728 621 Pfam CRAL/TRIO domain 150 313 IPR001251 -
Vvi19g728 621 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 17 612 - -
Vvi19g728 621 MobiDBLite consensus disorder prediction 1 35 - -
Vvi19g728 621 Gene3D - 132 354 IPR036865 -
Vvi19g728 621 SUPERFAMILY CRAL/TRIO domain 144 340 IPR036865 -
Vvi19g728 621 SMART sec14_4 144 316 IPR001251 -
Vvi19g728 621 Pfam CRAL/TRIO, N-terminal domain 96 123 IPR011074 -
Vvi19g728 621 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 144 319 IPR001251 -
Vvi19g728 621 SMART CRAL_TRIO_N_2 99 124 IPR011074 -
Vvi19g728 621 MobiDBLite consensus disorder prediction 9 32 - -
Vvi19g728 621 CDD SEC14 145 313 IPR001251 -
Vvi19g728 621 SUPERFAMILY CRAL/TRIO N-terminal domain 73 140 IPR036273 -
Vvi19g728 621 MobiDBLite consensus disorder prediction 440 466 - -
Vvi19g728 621 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 17 612 - -
Vvi19g728 621 MobiDBLite consensus disorder prediction 373 415 - -
Vvi19g728 621 Gene3D - 62 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g728 - - - vvi:100263435 1246.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1268 Cone15ag1294 . Csa07g01043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01034 Cme01g01117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003795 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 1 1 45