Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g729 ATGGCTTTGTGTGTTTATAAATACATATCTAGTCTGATCAATTTCCAAATACATTTATTTAATTCTGAAGTTCTGGAGATGTCTCAATTCATAGATTATTCACTGTCATTTGGCTCGAAGTGGAATCGCTCAGAAGACATTCTCCTTGAAAGAGCCATTTTGATTTTTCCAGAGGAAACCCCAAACAGGTGGTATAAGATTGTCACTCAAATCCCAGGAAAATCTCCCATGGATGTGCTTGAACACTACATAAAACTCATACAAGATATCGATGCGATCGACTTCGGTATCGAGAAGAAGAAAGGGACTCCATGGACTGAAGAAGAGCACGTACTGTTTCTTGAAGGATTAGTCAAATATGGAAAAGGTGACTGGAAAAGCATCTCTAGAAACTTTGTGATAACCAGGACGCCATCCCAGGTTGCAAGCCATGCTCAGAAGTACTTTGCAAGACAAAGGCCTGGGAATATGGGCAAGAAAAGGAAGAGAACCAGCATTCATGATATCACGACTGATGATCTTCCTCCACTAGGTGGTGTAACTCCATAG 549 40.62 MALCVYKYISSLINFQIHLFNSEVLEMSQFIDYSLSFGSKWNRSEDILLERAILIFPEETPNRWYKIVTQIPGKSPMDVLEHYIKLIQDIDAIDFGIEKKKGTPWTEEEHVLFLEGLVKYGKGDWKSISRNFVITRTPSQVASHAQKYFARQRPGNMGKKRKRTSIHDITTDDLPPLGGVTP* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9268236 9268866 - Vvi19g729 Vvi19g729 782228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g729 182 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 37 96 IPR043363 -
Vvi19g729 182 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 98 172 IPR043363 -
Vvi19g729 182 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
Vvi19g729 182 CDD SANT 104 149 IPR001005 -
Vvi19g729 182 ProSiteProfiles SANT domain profile. 100 153 IPR017884 -
Vvi19g729 182 ProSiteProfiles Myb-like domain profile. 39 87 IPR001005 -
Vvi19g729 182 Gene3D - 36 99 - -
Vvi19g729 182 Pfam Myb-like DNA-binding domain 104 149 IPR001005 -
Vvi19g729 182 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 37 96 - -
Vvi19g729 182 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 98 172 - -
Vvi19g729 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 153 IPR017930 -
Vvi19g729 182 Gene3D - 103 153 - -
Vvi19g729 182 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 152 IPR006447 GO:0003677
Vvi19g729 182 SUPERFAMILY Homeodomain-like 99 153 IPR009057 -
Vvi19g729 182 SMART sant 37 89 IPR001005 -
Vvi19g729 182 SMART sant 101 151 IPR001005 -
Vvi19g729 182 MobiDBLite consensus disorder prediction 152 182 - -
Vvi19g729 182 SUPERFAMILY Homeodomain-like 36 87 IPR009057 -
Vvi19g729 182 CDD SANT 40 87 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g729 - - - vvi:100253165 308.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g729 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008040 0 0 0 0 0 2 0 2 2 0 2 2 2 1 2 0 2 0 1 2 2 0 0 1 0 2 1 0 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14437 PF00249 Myb_DNA-binding 1.20E-12 CL0123 Vvi TF