Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g730 ATGTCCTTTGGGTATTTAGATTATTCATCATCATCAGCTAGGTCTGGCTGGACTCGTTCGGAGAACATTCTTTTAGAGAGAGCCATCTTGATGTTCCCAGAAGAAATCCCAGATCGTTGGTACAAAATTGCCAATCAAATTCCTGGAAAATCTACTATTGATGTGTTGGAACATTACATCAAACTCATACAGGATACTGATGCAATAGATTTTGGCTCTATGGATTGGAAAAAGGGGGCTCCTTGGACTGAGGAGGAGCACACATGGTTTCTACAAGGACTTCTAAAATTTGGGAAAGGTGATTGGAAGAACATCTCTAGACACTGTGTAACGACCAGGACTCCAACTCAAGTTGCTAGCCATGCTCAAAAGTATTTTGCACGGCAAAAGTCTGGAAATGCAGAGAAGAGGAGGAAAAGATCAAGCATTCATGACATCACCACCAGTGATCTTCATTCTCCACATGGTGGTGCTGCCTCATAG 483 42.44 MSFGYLDYSSSSARSGWTRSENILLERAILMFPEEIPDRWYKIANQIPGKSTIDVLEHYIKLIQDTDAIDFGSMDWKKGAPWTEEEHTWFLQGLLKFGKGDWKNISRHCVTTRTPTQVASHAQKYFARQKSGNAEKRRKRSSIHDITTSDLHSPHGGAAS* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9307510 9308113 - Vvi19g730 Vvi19g730 782229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g730 160 Gene3D - 8 76 - -
Vvi19g730 160 CDD SANT 17 63 IPR001005 -
Vvi19g730 160 SMART sant 13 65 IPR001005 -
Vvi19g730 160 SMART sant 78 128 IPR001005 -
Vvi19g730 160 ProSiteProfiles Myb-like domain profile. 81 126 IPR001005 -
Vvi19g730 160 Gene3D - 80 131 - -
Vvi19g730 160 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Vvi19g730 160 ProSiteProfiles SANT domain profile. 82 130 IPR017884 -
Vvi19g730 160 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 75 IPR043363 -
Vvi19g730 160 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 77 150 IPR043363 -
Vvi19g730 160 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Vvi19g730 160 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Vvi19g730 160 MobiDBLite consensus disorder prediction 130 146 - -
Vvi19g730 160 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Vvi19g730 160 CDD SANT 81 126 IPR001005 -
Vvi19g730 160 MobiDBLite consensus disorder prediction 126 160 - -
Vvi19g730 160 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 129 IPR006447 GO:0003677
Vvi19g730 160 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 12 75 - -
Vvi19g730 160 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 77 150 - -
Vvi19g730 160 SUPERFAMILY Homeodomain-like 77 131 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g730 - - - vvi:100259989 313.538
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008040 0 0 0 0 0 2 0 2 2 0 2 2 2 1 2 0 2 0 1 2 2 0 0 1 0 2 1 0 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14438 PF00249 Myb_DNA-binding 1.70E-11 CL0123 Vvi TF