Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g734 ATGTCTTCCGGCAGGTACATGGCTTACTCTCCTTCTCCCTCTACCGCTCCCCACTCCCCGCACATCGCCGGCCTCCGCTCCGCCACCTCTGCTCTTGTAGAGCAAGAGAAATATCTTTCTGAGTTACTGGCAGAGCGGCACAAGCTAAGTCCATTTATGCCTGTCCTCCCACATAGCTACCGGTTGTTGAACCAGGAAATATTGCGTGTAACCACACTGTTGGGGAATGCATCAATTTTAGATCAAAGTGGGCTTGAACATGCTAGCCCCCTCGCTTCTGGAGGAATATTTTCAAATGGAGGAGCCAATGTGAACGGATGGGCATCACCATTTCAATCAGAAATGTCAGGTTTATCAGCAGCACAAAACTGGCTAGGTTCTCAAGGTAGCTCATCTGGTCTTATTGTGAAGAGAACAATCAGGGTGGATATTCCTGTTGAGAAATTTCCTAGTTACAACTTTGTTGGGCGTCTCCTTGGTCCTAGGGGAAACTCTCTAAAGAGGATGGAAGCAACTACTGAGTGTCGTGTTTTAATCAGAGGTCGTGGCAGCATCAAGGACCCGGCTAGGGAAGAAATGATGCGAGGAAAACCAGGCTATGAGCATCTGAATGAACCTCTTCACATACTTGTGGAAGCGGAATTGCCAGTTGAGATAGTGGATGCTCGCCTGATGCAAGCGCGTGAAATACTCGAAGATTTGCTAAAGCCTGTGGATGAATCTCAGGATTTCTTTAAGAAGCAGCAACTGCGAGAGCTAGCAATGCTCAATGGCACACTTCGTGAGGAAGGCTCTCACATGTCCGGTTCTGTGTCCCCCTTTCACAACAGCCTAGGCATGAAGAGGGCCAAGACCAGGGGGTGA 864 48.96 MSSGRYMAYSPSPSTAPHSPHIAGLRSATSALVEQEKYLSELLAERHKLSPFMPVLPHSYRLLNQEILRVTTLLGNASILDQSGLEHASPLASGGIFSNGGANVNGWASPFQSEMSGLSAAQNWLGSQGSSSGLIVKRTIRVDIPVEKFPSYNFVGRLLGPRGNSLKRMEATTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESQDFFKKQQLRELAMLNGTLREEGSHMSGSVSPFHNSLGMKRAKTRG* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9376973 9384076 - Vvi19g734 Vvi19g734 782233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g734 287 CDD SF1_like-KH 139 261 - -
Vvi19g734 287 MobiDBLite consensus disorder prediction 264 287 - -
Vvi19g734 287 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 3 287 - -
Vvi19g734 287 PANTHER RNA-BINDING PROTEIN RELATED 3 287 IPR045071 -
Vvi19g734 287 MobiDBLite consensus disorder prediction 1 21 - -
Vvi19g734 287 MobiDBLite consensus disorder prediction 1 17 - -
Vvi19g734 287 Gene3D K Homology domain, type 1 30 267 IPR036612 GO:0003723
Vvi19g734 287 Pfam Homodimerisation region of STAR domain protein 36 74 IPR032377 -
Vvi19g734 287 SMART kh_6 136 229 IPR004087 GO:0003676
Vvi19g734 287 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 261 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g734 K14945 QKI; protein quaking - vvi:100246386 561.607
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g734 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01032 Cme01g01114
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006782 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37