Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g735 ATGGAGGAGACAATACCCTTCAAGAATCTCCATAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTGCACTCGGTGGCTTGGAATTGTACGGGCACGAAGCTAGCCTCCGGTTCTGTGGATCAAACGGCTCGAATTTGGCTCATTGAGCAACATGGGCATGGCAAGGTTAAAGATATTGAATTGAAGGGGCATACTGATAGTGTGGATCAGCTGTGTTGGGACCCCAAGCATGCTGATTTAATTGCAACTGCTTCCGGCGACAAGACTGTTCGTCTGTGGGATGCTCGGAGTGGAAAATGTACGCAGCAAGCAGAACTCAGTGGGGAGAATATCAATATTACCTACAAACCCGATGGGACACATATAGCTGTTGGGAACCGGGATGATGAATTAACAATACTGGATGTTCGCAAATTTAAGCCAATCCATAGGCGCAAATTCAGTTATGAGGTAAATGAGATTGCCTGGAACATGACTGGAGAGATGTTTTTTTTGACGACTGGGAATGGTACTGTAGAAGTACTAGCATACCCAGCCCTTCGACCACTTGACACCCTTATGGCTCATACTGCTGGTTGCTATTGCATCGCAATTGATCCAATAGGAAGATACTTTGCTGTTGGAAGTGCTGATTCCTTAGTCAGCCTTTGGGATATCTCAGAGATGCTATGCGTGCGGACGTTTACAAAACTTGAATGGCCTGTCAGGACGATAAGTTTCAATCACACAGGAGAGTATATCGCATCTGCCAGTGAAGATCTTTTCATTGATATCTCAAATGTTCACACAGGGCGAACAGTCCACCAGATTCCATGCCGGGCTGCCATGAACAGTGTGGAATGGAATCCAAAACACAATTTGCTTGCATATGCTGGAGATGACAAGAACAAGTATCAAGCTGATGAAGGCGTTTTCCGAATATTTGGATTTGAAAGTGCCTGA 942 45.33 MEETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWLIEQHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCTQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPALRPLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGVFRIFGFESA* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9387449 9392138 + Vvi19g735 Vvi19g735 782234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g735 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Vvi19g735 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 5 311 IPR040132 GO:0006406
Vvi19g735 313 Gene3D - 177 304 IPR015943 GO:0005515
Vvi19g735 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Vvi19g735 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Vvi19g735 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Vvi19g735 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Vvi19g735 313 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Vvi19g735 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Vvi19g735 313 Pfam WD domain, G-beta repeat 13 46 IPR001680 GO:0005515
Vvi19g735 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Vvi19g735 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Vvi19g735 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Vvi19g735 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Vvi19g735 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Vvi19g735 313 SMART WD40_4 97 135 IPR001680 GO:0005515
Vvi19g735 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Vvi19g735 313 CDD WD40 11 295 - -
Vvi19g735 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 46 IPR001680 GO:0005515
Vvi19g735 313 Gene3D - 6 176 IPR015943 GO:0005515
Vvi19g735 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 46 - -
Vvi19g735 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Vvi19g735 313 Pfam Anaphase-promoting complex subunit 4 WD40 domain 233 282 IPR024977 -
Vvi19g735 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Vvi19g735 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Vvi19g735 313 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g735 K12880 THOC3; THO complex subunit 3 - vvi:100241262 653.284
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g735 . . . . . . . Bma13g01140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00986 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00518 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011335 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30