Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g74 ATGCTTGGATATGAGAACTTTAGCCTCACTACCAAGTCTAATTATTTTGTTATATGTCAGTTGTACTTTTCCTTTTCTTATTTTTTGCTTCCTTTTGTGAATTACAGCCAGCTGAAGGGTCTTGATTTGGATGGAACTTTACCTGATGAGTTTGGAAATCTTTCTTATCTGCAAGAACTAAACTGTGAGTATTATACTTCATTTCATTTATCTGCCAATTTGTCCACTGAGAAAAATTCCATACAAGCTCAGTTAAATTCTCTAGTTATCTATAAAGATATTAAACTGTTGCAGGTATCTGCAAGGCACATCAATGGACGGGCCCATTCCTTCTACTATATCCCAGTTGAAAAACTTAATCGAGTTTGGACCGACTACATCTTTCCCCAATTTGAAGGATATGAAAAACTTAAAAATATTGGTGATGAGAAATTGCTCCATTACAGAGACCTGACCTTCAACAGACTGAATCATACAATTCCAGTGAGCTTTAAGCAAGAAAAGAAGGAGAAAATAAAACTCGATTTCATGTTTCTCACCAACAACTCACTGACTGGAGAAGTGCCCAGCTGGATAATATCAGACGCTGAAAACAAAATGTTGGGCCGCACCTTGATTCTTGCAAAAACCAAGTGTAAGCTTTCTTCCTTCCATTATTTGTACATTTGGTTCTACTATTCCTTGTATATCAATTGTGGAGGAGAGGAAACAACTTTTAAAGGGAAGACATATGAAAAAGACAACAATGTTGAGGGTGCGTCACAGTTCTTTACTGATGGTATAGACAAATGGGCTTATAGCAGTACAGGGGCTTTCATAGGTAACCAGGGTGGTAGTCACCTAGCCAAAAACACATCTGCTTTGAACTCAGAGGATGCAGAGATGTACCAAACTGCTCGTCTTGCTCCCATCTCACTCAAGTATTATGGGCTTTGCTTGCGAAAGGGCCCTTATAAAGTGCGACTCCAATTTGCTGAAATCATGTTTTTTAGTAACCAGACATTTGGTAGCCTTGGGAGGCGCTTGTTCCACGTTTCAATTCAAGGGAATGTAGTTTTGAAGGATTTTAATATCATGGAAGAAGCTAAAGGTGCTGGTAAGGGCATTTATAGGGATTTTGATGCCTCTGTTGATGGTAGCACTCTGGAGATCCACTTATACTGGACAGGCAAAGGGACTAATTCCATTCCGGATGAAGGTGTATATGGGCCTCTTATATCTGCTATTGCAGTGACACCAAAATTCAATCCCAACCCGGGGCTGTCTGTTGGAGATATCATCGGCATTGTGATACCTTCATGTGTGGTCCTCGTATTGATTTTGGTACTCCTACGAATGAAAGGCTACTTAGGAGGAAAAGACCTTGAAGATAGAGAACTACGTGAGCTAGGGATGCAAACTGGTTATTTTAGTTTACGACAGATCAAAGCTGCTACCAATAACTTTGACTCTGCAAATAAGATTGGTGAAGGTGGATTTGGGCCAGTCTACAAGGGTGTACTGTCAGATGGTTCAGTAATTGCTGTTAAGCAGCTCTCTTCTAAATCAAAGCAAGGGAACCGAGAATTTGTAAATGAAATAGGCATGATATCTGCCTTACAACACCCAAATCTTGTGAAGCTTTATGGCTGTTGTATTGAAGGGAACCAGTTGTTGCTCATATACGAATATTTGGAAAACAATTGTCTTGCACGTGCACTTTTTGGTTCCGAAGAACAGCGGCTAAATTTGGACTGGCCAACTAGGAAGAAGATATGCTTGGGGATAGCAAGGGGATTGGCATATCTTCATGAGGAGTCAAGATTGAAAATTGTTCATAGAGATATAAAGGCAACAAATGTGCTGCTTGATAAGAATCTAAATGCTAAGATATCTGACTTTGGCTTGGCTAAGCTGGATGAAGACGAGAACACCCATATCAGCACACGGATAGCTGGAACGATAGGATACATGGCTCCTGAATATGCAATGAGGGGTTACTTGACCGACAAAGCAGATGTTTACAGCTTTGGAATTGTTGCTTTAGAGATTGTCAGCGGAAAAAGCAACACCAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGCAGGGAAACCTTCTGGAGCTGGTGGATCCAAGTCTTGGATCAAACTATTCAGAGGAGGAGGTGATGAGGATGCTGAACTTGGCCCTCTTATCCACCAACCAGTCTCCCACTCTCAGGCCATCCATGTCCTCTGTGGTGAGTATGCTTGATGGCAAAATTGCAGTCCAAGCACCAACGATCAAGCATGATTCGATGAACCCAGATATGCGATTCAAAGCCTTTGAGAAGCTCTCACTGGACAGCCAGTCTCATGTCTCAGCATTCTCTGTAGACAAGAAGAAACAAGGGGATTTCCTTCATCGAGCTTGTTCTTGCTTGAAGTTTTCTGAAAACTATTTCGATTTGATTCTTGAGGAAGTAGAAACAGAAATAACTATTATTTCCTGTTATATAATTACAATATTTGTATAA 2523 40.63 MLGYENFSLTTKSNYFVICQLYFSFSYFLLPFVNYSQLKGLDLDGTLPDEFGNLSYLQELNCEYYTSFHLSANLSTEKNSIQAQLNSLVIYKDIKLLQVSARHINGRAHSFYYIPVEKLNRVWTDYIFPQFEGYEKLKNIGDEKLLHYRDLTFNRLNHTIPVSFKQEKKEKIKLDFMFLTNNSLTGEVPSWIISDAENKMLGRTLILAKTKCKLSSFHYLYIWFYYSLYINCGGEETTFKGKTYEKDNNVEGASQFFTDGIDKWAYSSTGAFIGNQGGSHLAKNTSALNSEDAEMYQTARLAPISLKYYGLCLRKGPYKVRLQFAEIMFFSNQTFGSLGRRLFHVSIQGNVVLKDFNIMEEAKGAGKGIYRDFDASVDGSTLEIHLYWTGKGTNSIPDEGVYGPLISAIAVTPKFNPNPGLSVGDIIGIVIPSCVVLVLILVLLRMKGYLGGKDLEDRELRELGMQTGYFSLRQIKAATNNFDSANKIGEGGFGPVYKGVLSDGSVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNCLARALFGSEEQRLNLDWPTRKKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLHEQGNLLELVDPSLGSNYSEEEVMRMLNLALLSTNQSPTLRPSMSSVVSMLDGKIAVQAPTIKHDSMNPDMRFKAFEKLSLDSQSHVSAFSVDKKKQGDFLHRACSCLKFSENYFDLILEEVETEITIISCYIITIFV* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 836782 845543 + Vvi19g74 Vvi19g74 781573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g74 840 SMART serkin_6 482 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g74 840 Gene3D Phosphorylase Kinase; domain 1 453 557 - -
Vvi19g74 840 SUPERFAMILY L domain-like 29 192 - -
Vvi19g74 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Vvi19g74 840 SUPERFAMILY Protein kinase-like (PK-like) 465 765 IPR011009 -
Vvi19g74 840 CDD STKc_IRAK 488 755 - -
Vvi19g74 840 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 225 797 - -
Vvi19g74 840 ProSiteProfiles Protein kinase domain profile. 482 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g74 840 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 225 797 - -
Vvi19g74 840 Gene3D Ribonuclease Inhibitor 18 212 IPR032675 -
Vvi19g74 840 Gene3D - 226 414 - -
Vvi19g74 840 Pfam Protein tyrosine and serine/threonine kinase 485 711 IPR001245 GO:0004672|GO:0006468
Vvi19g74 840 Gene3D Transferase(Phosphotransferase) domain 1 558 767 - -
Vvi19g74 840 Pfam Malectin domain 227 409 IPR021720 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76478 PF07714 PK_Tyr_Ser-Thr 2.20E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g74 - - vvi:100255526 1217.99