Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g743 ATGTCCATCAATTCATTCGTGGGTCAGATCAACATGGAGATGGGATCATTAGAGGAGAGATCAAATCATGAGCTTGAGGATGAGAGTCTCATAAGTCCAGCAAAAATTGGGCAAAAGACAAACTCTTTTCACGCACCACAATTGGGATCTTCTTGTCGAGATTGGCGAATTTGGAGCAGTAAACTTTTGGGGAATGCTGTATTTATGAGCATCCGGGTTGTTGTTTTCTCCAGCAAACTCAACTTGCTTATGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAATGGCTGGGTCTTCTTTCTAACCTTGTTAGGGATAACACCATTGGCTGAGCGTTTAGGTTATGCTACAGAGCAGCTGTCTTTCTATACTGGGGATACAGTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATTACTGGGCTCAATTCTGTCAAATATGTTATTGGTGCTTGGATGTGCATTCTTTTGTGGTGGGATTGTTTTCAATAACAAGCAGCAGGTGTTTAACAAGGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGAGGTCAGAGTTGGCTCTTTCAAGGTTTAGCAGCTGTATTATGCTTCTGGCATATGCTGGCTACCTTGTTTTCCAGTTAAAGAGCCAAAAGGATCTATATATGTCTATTGCTGAGGGAGGGACTCTGCCTGAAGAGGGCTCAGATGATGATGAAGGTCCAGAGATCTCTAAATGGGAATCAGTAATTTGGCTTTCGATCTTAACTGCTTGGATAGCAATCCTATCAGAATATCTTGTTGATGCAATAGAGGGTGCATCGATTGCGTGGAAAATGCCTGTTTCATTTATTAGCGTGATTTTGCTTCCAATTGTAGGGAATGCTGCAGAGCACGCAAGTGCTATTATGTTTGCTATGAAAGATAAGCTTGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGATTCCCTTTTGTGTGGTTATTGGGTGGATAATGGGCTGCCCCATGGACTTAAATTTTCAACTTTTTGAGACAGCAACACTTTTTATAACTGTTTTGGTTGTGGCCTTCTTGCTTCAGGAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGAACATAAAACATAG 1341 41.09 MSINSFVGQINMEMGSLEERSNHELEDESLISPAKIGQKTNSFHAPQLGSSCRDWRIWSSKLLGNAVFMSIRVVVFSSKLNLLMPFGPLAVLVHGLSDHNGWVFFLTLLGITPLAERLGYATEQLSFYTGDTVGGLLNATFGNATELIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFCGGIVFNNKQQVFNKAIAVLNSGLLLMAVMGLLFPAVLHFTHTEVHFGRSELALSRFSSCIMLLAYAGYLVFQLKSQKDLYMSIAEGGTLPEEGSDDDEGPEISKWESVIWLSILTAWIAILSEYLVDAIEGASIAWKMPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFAIPFCVVIGWIMGCPMDLNFQLFETATLFITVLVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPTLVEHKT* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9497777 9504060 - Vvi19g743 Vvi19g743 782242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g743 446 TIGRFAM caca2: calcium/proton exchanger 70 434 - -
Vvi19g743 446 TIGRFAM cax: calcium/proton exchanger 84 434 IPR004798 GO:0006816|GO:0015369
Vvi19g743 446 Pfam Sodium/calcium exchanger protein 102 257 IPR004837 GO:0016021|GO:0055085
Vvi19g743 446 Pfam Sodium/calcium exchanger protein 292 431 IPR004837 GO:0016021|GO:0055085
Vvi19g743 446 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 16 442 - -
Vvi19g743 446 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 16 442 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vvi19g743 446 Gene3D - 129 276 IPR044880 -
Vvi19g743 446 Gene3D - 277 435 IPR044880 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g752 Vvi19g743 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g743 K07300 - vvi:100249832 842.802