Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g744 ATGAAGCTCAACAACGAGACTGTGTCAATTGAGCTCAAGAACGGTACCGTTGTTCATGGCACCATCACAGGTGTGGATATTAGTATGAACACACATTTGAAGACTGTGAAACTGACTCTGAAGGGGAAAAATCCAGTGACTATGGATCACCTGAGTGTGAGGGGCAACAATATTCGGTATTATATACTTCCCGACAGCATAAATCTGGAGACATTGCTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACTGCTGGACGGCCTATGGGGCGTGGTCGGGGCCGTGGGCGTGGACGTGGACGTGGTCGAGGCCGCTAG 324 50.93 MKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKKPTAGRPMGRGRGRGRGRGRGRGR* 108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9531037 9539130 + Vvi19g744 Vvi19g744 782243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g744 107 Gene3D - 1 78 - -
Vvi19g744 107 MobiDBLite consensus disorder prediction 86 107 - -
Vvi19g744 107 SUPERFAMILY Sm-like ribonucleoproteins 2 106 IPR010920 -
Vvi19g744 107 CDD Sm_D1 1 86 IPR034102 GO:0000387
Vvi19g744 107 SMART Sm3 1 63 IPR001163 -
Vvi19g744 107 MobiDBLite consensus disorder prediction 77 107 - -
Vvi19g744 107 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 1 103 - -
Vvi19g744 107 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 103 IPR027141 GO:0006396
Vvi19g744 107 Pfam LSM domain 2 62 IPR001163 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g744 K11087 SNRPD1, SMD1; small nuclear ribonucleoprotein D1 - vvi:100258386 184.496
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g744 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002807 3 4 2 4 2 0 3 1 0 1 1 1 2 1 1 3 0 2 2 1 1 1 2 1 2 1 2 3 1 2 50