Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g749 ATGGCGTCCCCTGGAAATCCAAACCAAGCGGCAGCGTTTGATATGCACAAACTCTTCAAACCCACAAGCCCTAGCCCTCAAAACCCTAACAATCTCAATTCTTCTTCTCCATTTCCACCCTCCTCTTATCCTCCACCGCCTTCTGCCTCTTACCCTCCGCCCTCTGGCCCTTATTCCTACCCTCCTCAAACCTCCCCATTTCACCATCAACATCACTACCATATCCCCTACCCTCAAGAGCAACTCTCTAACATGCACCACCAGCGCTCAGTTTCTTATCCTACTCCTCTTCTTCAACCTCCGCCTCACCACCTTGCTCCTCCAAACCCTAACCCCGGTGCTCGATTGATGGCGCTCCTCAGCCCTCCGACCACCAATCTTGATTTGACGCAGCAGCCCGCCATGCCGGTGGCTCCAATTCAGCAGCCAGCTTCTGGGGTTTCCGAATTTGCGGCCTCTCCCAATGTTCCGATCCTGCCTTCTGCCCCTCCGCCAGGGATACCGAATCCTGCTGTTGTCACTGCCAGCCCTGTGCGGATGCCTAGCAGTAAGTTGCCCAAAGGGCGGAGATTGGTGGGTGAGAATGTGGTGTATGATGTGGATGTTAGGCTGCAAGGCGAGGTGCAGCCTCAGCTTGAGGTCACTCCGATCACCAAGTATGTTTCCGATCCTGGCCTCGTTTTAGGACGACAGATTGCTGTCAATAAAACCTATATATGCTACGGGTTGAAATTGGGGGCGATTCGGGTGCTTAATATAAACACCGCACTGAGATATTTGCTCAGAGGTCATGCTCAGAGGGTGACTGACATGGCTTTCTTTGCTGAGGATGTTCATCTTTTAGCTAGTGCAAGCATCAATGGACGTGTTTATGTATGGAAGATTTCTGAAGGTCCAGATGAGGAAGATAAGCCACAAATTACAGGAAAGATTGTGATTGCCATTCAAATAGTAGGAGAGGGGGAATCTGTAAATCCAAGAGTTTGCTGGCACTGTCACAAACAAGAAGTTTTGGTTGTTGGGATTGGAAAACGTATTCTGAAGATTGACACTACGAAAGTTGGAAAGGGTGAATCTTATTCTGCAGATGAACCTCTCAACTGTCCAGTAGACAAGCTTATTGATGGGGTCCAATTTATTGGGAAACATGATGGAGAAGTGACTGATCTGTCGATGTGCCAATGGATGACCACTCGTTTAGTTTCTGCTTCAACGGATGGCACGATAAAGATCTGGGAAGACCGCAAGACACTTCCTCTTCTGGTACTGAGGCCACATGATGGCCATCCTGTCAATTCGGCTACATTCCTGACTGCTCCTCACCGCCCGGATCACATTATTCTCATAACTGCGGGCCCACTGAATAGGGAAGTGAAGCTATGGGCCACAGAAAGTGAAGAAGGCTGGCTGCTGCCTAGTGATGCAGAATCATGGCATTGTACTCAGACGTTGGACTTGAAGAGTTCAGCTGAACCTTGTGTTGAGGAGGCGTTCTTTAATCAAGTGTTAGCATTGTCTAAATCTGGCCTTCTCTTACTTGCAAATGCCAAAAAGAATGCTATATATGCTGTACATTTGGAGTATGGTTCTAATCCTGCAGCAACCTGCATGGACTATATAGCAGAGTTTACTGTCACTATGCCTATTTTAAGTTTTACTGGGACAAGTGAATTATTACATGGTGAACATGTTGTTCAGGTATATTGTTTCCAGACACAAGCTATTCAGCAGTATGCTTTGAACTTATCCCAGTGTTTGCCACTGTTGCCGGAAAATGTAGGGGTAGAGAAGTCTGACTCTGGTGTTTCACATGATAGTGAACCTGGTGTGAGATTTCCTGTGAGCTCTGCTTCTATTGAGTCTGCCACTTTGAGTCCAGAATCTAAACCTGGTGCTTTACCTTTGGTCAATAATGACAATGATATTGTTTCAATTCCATCACCACCTCTTCCTTTGAGTCCAAGGCTGTCAGGAAAGTTGTCTGGTTTTAGAAGTCCAACAAATAACTTTGAACCAGGTCCCACCCTTGGCGATCGTGGCGATAGTGACCAAGTAGTTATTGATTATTCAGTTGACAGGCAAATAGATACTGTTTGTACAACCCTCTCTGATTTGCCTTCTTTAGATGATGATTCAAGGAATGATGAAAACAAAAGTAAGAGTGAGGGAGAGGCCAATATTCAAGATGTCTCTATCAACAGTGATGTGAGCAATGTTGAGGTGGAGAAAGCCTTTTGCTCCCAGGCTTCAGATCTTGGAATTGAGATGGCCAAAGAGTGCAGTGCATTATCATCTGAAACTTATGTTGTGGAGGAATCTCGGCAAGTTGATGGTGCTAGAATGGAGGCATTGGCCCGGCCTTCAAATGCAGGTGAGGATGAAGTGATTGATGCTATAAAAGATGTGTCTGGAAAACATAAGGGGAAAAACTCTCAAGTATCCCCATCTCCAACTGCTTTCAATTCTACCGATTCTTCCAATGAGCCAGGTGCAAATTTGAGTAGCCCTTCAGTGGAAGCTGCTGTTCCCCATATTCTGGCTATGCAGGAGACACTTAATCAGCTTTTGTCCATGCAAAAAGAAATGCAGAAGCAGATATCAGTATTAGTTGCTGTCCCAGTTACCAAAGAAGGTAGAAGATTAGAGGCTACTCTAGGACGGAGTATGGAGAAATCTGTCAAGGCCAATGCTGATGCTTTGTGGGCTAATATCCTAGAAGAGAATGCGAAACATGAGAAGTTAGTACGAGATCGTACACAGCAGATAACAAGTTTGATTACTAATAGTTTGAACAAGGACTTGCCAGCCATATTGGAGAAAACAGTGAAAAAGGAAATGGCTGCAGTTGTACCAGCTGTAGCTCGCACAATTACGCCTGTTGTTGAGAAAACAATTTCCTCGGCTATCACAGAGACCTTCCAGAGAGGAGTTGGTGATAAGGCATTGAATCAAGTGGAGAAATCAATTAATTCAAAACTTGAAGCCACTGTTGCTAGGCAAATTCAAGTACAGTTTCAAACTTCTGGCAAACAAGCTCTTCAGGATGCATTAAAATCCAATCTGGAAGCTTCAGTGGTCCCAGCGTTTGAGATGTCATGCAAAGCAATGTTTGACCAAGTTGACTCTACATTTCAAAAAGGAATGGTTGAGCATGCCACTACAGTTCAGCAGCAATTTGAATCCACCCATTCTCCTTTAGCACTTGCTTTAAGGGATGCCATTAATTCAGCATCATCAATGACTCAAACTTTAAGTGGAGAATTGGCTGATGGTCAACGAAAGCTCTTAGCTCTTGCAGCTGCAGGGGCAAACCCTACATCAGTGAATCCCCTGGTTACTCAACTGAGTAATGGACCTTTGGGTGGTCTCCATGACAAGGTTGAGATGCCTTTGGATCCAACAAAGGAGCTATCTAGATTGATATCTGAACGCAAATATGAAGAGGCTTTCAATGGAGCCCTACAACGAAGTGATGTCTCTATCGTGTCATGGTTGTGTTCTCAGGTTGATCTGCAAGGGATTTTGTCAATGGTTCCTCTCCCATTGAGCCAAGGAGTACTGCTCTCCCTTCTGCAGCAGTTGGCCTGTGACATCAACAAGGATACACCCCGAAAATTGGGATGGATGACAGATGTGGCAGTAGTCATAAACCCAGGAGACCCCATGATCGCAATGCATGTGCGGCCCATCTTCGATCAGGTCTATCAGATACTAAACCATCATCGATCCCTACCCACCACAACCAGTTCCCAAGGTCAAAGCATCCGCCTTCTTATGCATGTCATCAACTCCATGCTGATGACCTGTAAATGA 3813 45.61 MASPGNPNQAAAFDMHKLFKPTSPSPQNPNNLNSSSPFPPSSYPPPPSASYPPPSGPYSYPPQTSPFHHQHHYHIPYPQEQLSNMHHQRSVSYPTPLLQPPPHHLAPPNPNPGARLMALLSPPTTNLDLTQQPAMPVAPIQQPASGVSEFAASPNVPILPSAPPPGIPNPAVVTASPVRMPSSKLPKGRRLVGENVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQIAVNKTYICYGLKLGAIRVLNINTALRYLLRGHAQRVTDMAFFAEDVHLLASASINGRVYVWKISEGPDEEDKPQITGKIVIAIQIVGEGESVNPRVCWHCHKQEVLVVGIGKRILKIDTTKVGKGESYSADEPLNCPVDKLIDGVQFIGKHDGEVTDLSMCQWMTTRLVSASTDGTIKIWEDRKTLPLLVLRPHDGHPVNSATFLTAPHRPDHIILITAGPLNREVKLWATESEEGWLLPSDAESWHCTQTLDLKSSAEPCVEEAFFNQVLALSKSGLLLLANAKKNAIYAVHLEYGSNPAATCMDYIAEFTVTMPILSFTGTSELLHGEHVVQVYCFQTQAIQQYALNLSQCLPLLPENVGVEKSDSGVSHDSEPGVRFPVSSASIESATLSPESKPGALPLVNNDNDIVSIPSPPLPLSPRLSGKLSGFRSPTNNFEPGPTLGDRGDSDQVVIDYSVDRQIDTVCTTLSDLPSLDDDSRNDENKSKSEGEANIQDVSINSDVSNVEVEKAFCSQASDLGIEMAKECSALSSETYVVEESRQVDGARMEALARPSNAGEDEVIDAIKDVSGKHKGKNSQVSPSPTAFNSTDSSNEPGANLSSPSVEAAVPHILAMQETLNQLLSMQKEMQKQISVLVAVPVTKEGRRLEATLGRSMEKSVKANADALWANILEENAKHEKLVRDRTQQITSLITNSLNKDLPAILEKTVKKEMAAVVPAVARTITPVVEKTISSAITETFQRGVGDKALNQVEKSINSKLEATVARQIQVQFQTSGKQALQDALKSNLEASVVPAFEMSCKAMFDQVDSTFQKGMVEHATTVQQQFESTHSPLALALRDAINSASSMTQTLSGELADGQRKLLALAAAGANPTSVNPLVTQLSNGPLGGLHDKVEMPLDPTKELSRLISERKYEEAFNGALQRSDVSIVSWLCSQVDLQGILSMVPLPLSQGVLLSLLQQLACDINKDTPRKLGWMTDVAVVINPGDPMIAMHVRPIFDQVYQILNHHRSLPTTTSSQGQSIRLLMHVINSMLMTCK* 1271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9659261 9673621 - Vvi19g749 Vvi19g749 782248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g749 1270 MobiDBLite consensus disorder prediction 808 834 - -
Vvi19g749 1270 Gene3D - 226 573 IPR015943 GO:0005515
Vvi19g749 1270 MobiDBLite consensus disorder prediction 38 61 - -
Vvi19g749 1270 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 740 1270 - -
Vvi19g749 1270 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 1 605 - -
Vvi19g749 1270 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 618 729 - -
Vvi19g749 1270 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 213 527 IPR032401 -
Vvi19g749 1270 MobiDBLite consensus disorder prediction 703 726 - -
Vvi19g749 1270 SUPERFAMILY WD40 repeat-like 233 526 IPR036322 GO:0005515
Vvi19g749 1270 MobiDBLite consensus disorder prediction 95 109 - -
Vvi19g749 1270 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 413 IPR001680 GO:0005515
Vvi19g749 1270 MobiDBLite consensus disorder prediction 803 837 - -
Vvi19g749 1270 MobiDBLite consensus disorder prediction 646 682 - -
Vvi19g749 1270 MobiDBLite consensus disorder prediction 89 109 - -
Vvi19g749 1270 Gene3D - 1182 1269 IPR044938 -
Vvi19g749 1270 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 1 605 IPR045152 GO:0031087
Vvi19g749 1270 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 740 1270 IPR045152 GO:0031087
Vvi19g749 1270 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 618 729 IPR045152 GO:0031087
Vvi19g749 1270 MobiDBLite consensus disorder prediction 21 37 - -
Vvi19g749 1270 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 303 IPR001680 GO:0005515
Vvi19g749 1270 SMART WD40_4 254 294 IPR001680 GO:0005515
Vvi19g749 1270 SMART WD40_4 373 413 IPR001680 GO:0005515
Vvi19g749 1270 MobiDBLite consensus disorder prediction 1 71 - -
Vvi19g749 1270 MobiDBLite consensus disorder prediction 708 723 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g749 K12616 EDC4; enhancer of mRNA-decapping protein 4 - vvi:100259985 2248.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43