Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g750 ATGTCTGGCGAGGTCCTGAAGCGTGCTAGGTACAAGACGTCAGTCAAGGACTCTGGAGTTGCGGGTGTTCTGAAAATGACTGAGGACAAATTTGTATTCATGCCTAATGACCCCACATCATCTGCAAGGTTCGATGTTGAGTTTCGGTTCATTAAAGGTCACAAATTTAGCAAGGGGGGATCAAATAAACCTGCATTGCTTAATCTCACACAAGATTCCGAAAAGGGTGGAGGTTACATTTTTGAGTTTGAAAACTATCCAGACCGTGAAGTTTGCCGAGAATTTGTGGGCAGAGCCCTTGCAAAATTCAGTGAGGCTTCAAAAGCTGGTTCTGAACAATCTGCGGTTAAACTTTTTGATGAGCAACTTAGTACCATAGAAATGGAGCGCCGGATAAAGCTACTGCGAGAGGATAGTGAGTTGCAGAAACTTCATAAGCAATTTGTACTCAGTGGTGTCTTGACAGAAGCTGAATTTTGGGCAACTAGGAAGAAATTGCTGGATGGGAATACTAGTAGAACTTCAAAACAACGTGTGGGATTCAAAAGTGCCATGATATCGGATCTTAAACCATTGACTGATGGTCGGACAAACAGAGTTACATTTAACTTGACACCAGAAATAATTCATCAGATTTTTGCTGAGAAACCAGCTGTTCATCAGGCATTTTTGAATTTTGTTCCCAATAAGATGACAGAAAAGGACTTCTGGAACAAATATTGTAGAGCCGAATACCTTCATTGTACGAGAAACACAGTTGCTGCTGCAGCAGAGGCTGCTGAAGATGAGGAACTTGCTGTTTTCTTGAAGCATGATGATATATTGGCCAATGAAGCTCGGCGGAAGATCAGACGGGTTGATCCAACTTTGGACATGGAGGCTGACCAGGGGGATGATTATATGCATCTTCCGGATCATGGTATCTTTCGTGATGGTAGCAAGGAAATTATTGACCCACAATATGAGCAATATAGAAGGACTCTTTCACAAGACCTTAATCGGCATGCTGCAGTTGTTCTTGAAGGAAGACCTATAGATGTGGAGTTGGAAGACACAAGAACTGTAGCAGAGGCTCTTGCCAAGTCGAAACGGGTTGAGGCAGCTAATGAAAAATCTGATGGGAGTGTAACCCGGGAAAGATTAGAAAGGATTTCTCGGATGACTGAGATTGAGGATCTTCAGGCACCTCGTGACCTTCCATTTGCAGCACTTTGCATTAAGGATCCTCGTGACTATTTTGATTCCCAACAAGCGAATGCATTAAAAACTTTGGGAGACACCCTAGCCGGATCAAAGCAAATAAAATGCAGCCTGAGCACCCAGGAAGCATATGGTTCTTTGAGAGGATTTATTTCTGAGATCAAATCTGTAGGATTAAGTGATCCCATAGTTAAACCTGATATTGCTCTTAAGGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGGAAGAATCCTCAAGAAAGCGTTCTGGATAGATTGCCAATCATTACTAAAGAGGAATTGCTACATCATTGGACCTCAATTCAAGAATTACTGAGACATTTCTGGTCGTCATATCCAATTACAACTACATATCTTTATACTAAGGCAAGCAGGCTAAAAGATGCCATGTCTCAAATTTATCCAAAGCTACAGGAGATAAAGGAATCTGTGCAGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGGCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCAGCGCGAAGTGGAGAAAGACCCAATGGATTTGTCTAG 1809 42.18 MSGEVLKRARYKTSVKDSGVAGVLKMTEDKFVFMPNDPTSSARFDVEFRFIKGHKFSKGGSNKPALLNLTQDSEKGGGYIFEFENYPDREVCREFVGRALAKFSEASKAGSEQSAVKLFDEQLSTIEMERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNGFV* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9695172 9706004 - Vvi19g750 Vvi19g750 782249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g750 602 Gene3D - 126 164 - -
Vvi19g750 602 ProSiteProfiles BSD domain profile. 119 171 IPR005607 -
Vvi19g750 602 Pfam BSD domain 202 251 IPR005607 -
Vvi19g750 602 SUPERFAMILY BSD domain-like 200 249 IPR035925 -
Vvi19g750 602 ProSiteProfiles BSD domain profile. 196 248 IPR005607 -
Vvi19g750 602 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 8 597 IPR027079 GO:0000439|GO:0006289|GO:0006351
Vvi19g750 602 Pfam TFIIH p62 subunit, N-terminal domain 21 93 IPR013876 -
Vvi19g750 602 PANTHER - 8 597 - -
Vvi19g750 602 SUPERFAMILY PH domain-like 11 103 - -
Vvi19g750 602 SUPERFAMILY BSD domain-like 122 167 IPR035925 -
Vvi19g750 602 SMART wurzfinal6 196 248 IPR005607 -
Vvi19g750 602 SMART wurzfinal6 113 171 IPR005607 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g750 K03141 TFIIH1, GTF2H1, TFB1; transcription initiation factor TFIIH subunit 1 - vvi:100249755 1184.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003179 1 12 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 0 1 1 0 1 1 2 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14440 PF08567 PH_TFIIH 1.90E-06 CL0266 Vvi TF