Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g751 ATGAAGATCACTGTAATGACCGCCGACGAACAGATCATCTCCTTGGACGTTGATCGCGATGAATCCGTTGAGAATGTGAAAGCTCTGCTCGAGGTGGAGACGCGTGTGCCACTGCAGCAACAGCAGTTGCTGTTTAATGGCCAGGAGATGAGGAATAATGAGAAATTGAGTGCGCTTGGTGTTAAAGACGAAGATTTGGTGATGATGGTCTCAAATGCTGCTCCAAGTTCATCTACCAATGCTTTAAGCCTCAATCCTGATGGGTCTGCTGTTAACCCTGAAGCTCTACAGCAACATTTTAGACGTGAGTCCAACACGATGGCACAGCTTTTTCAGACTGATCCTGAATTTGCACAAGCTCTTCTTGGAAATGATCTCAATAAGCTGCAGGAGATCTTACGGCAACGTCATCGCCATAGATCTGAAATTCAACGTCAACGAGATGAGGAGCTGGCTCTGCTTTATGCGGATCCTTTTGACGTGGAGGCACAGAAGAAAATTGAAGCTGCCATTCAACAGAAAGGAATTGATGAGAACTGGGCAGCTGCATTGGAATATAACCCTGAAGCTTTTGCAAGGGTGGTCATGCTGTATGTTGACATGGAAGTCAATGGAGTCCCTTTGAAGGCATTTGTTGATAGTGGAGCTCAGTCGACAATAATATCTAAAAGCTGTGCTGAGCGTTGTGGACTGTTGAGGCTTTTAGATCGACGTTATAGAGGCATTGCTCATGGAGTTGGTCAATCAGAGATACTGGGCCGAATACATGTAGCTCCAATCAAGATTGGGAATATATTTTATCCTTGTTCCTTTATGGTACTGGATTCTCCAAATATGGAATTCCTTTTTGGGCTAGATATGCTTCGTAAACACCAGTGTATAATTGATTTAAAGGACAATGTCTTAAGAGTTGGTGGAGGGGAGGTTTCAGTGCCATTTTTGCAAGAAAAGGATATTCCATCTCATTTTCTGGATGAAGAGAGGTATTCCAAGCAAGCTTCAAGCTCAGGGGGCCCAGCTGCATCAGGCGCTAAAGACAAGAATGATAATCCATCGGCTGGAGTTCAATCTGTTGGAAGCGGAGGTGGTGGTGCCTTGGCACAGGGAACGGAATTTGAAGCCAAGGTGACGAAGCTTGTTGAGTTGGGATTTGAAAGAGGGGCGGTGATACAAGCACTGAGACTTTTTAATGGAAACGAAGAGCAGGCAGCTGGGTTTCTTTTCGGGGGTTGA 1233 45.26 MKITVMTADEQIISLDVDRDESVENVKALLEVETRVPLQQQQLLFNGQEMRNNEKLSALGVKDEDLVMMVSNAAPSSSTNALSLNPDGSAVNPEALQQHFRRESNTMAQLFQTDPEFAQALLGNDLNKLQEILRQRHRHRSEIQRQRDEELALLYADPFDVEAQKKIEAAIQQKGIDENWAAALEYNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDRRYRGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFMVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSHFLDEERYSKQASSSGGPAASGAKDKNDNPSAGVQSVGSGGGGALAQGTEFEAKVTKLVELGFERGAVIQALRLFNGNEEQAAGFLFGG* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9727790 9736298 + Vvi19g751 Vvi19g751 782250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g751 410 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190|GO:0006508
Vvi19g751 410 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Vvi19g751 410 Gene3D - 340 410 - -
Vvi19g751 410 SMART uba_6 372 409 IPR015940 -
Vvi19g751 410 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Vvi19g751 410 SUPERFAMILY UBA-like 358 410 IPR009060 GO:0005515
Vvi19g751 410 Pfam UBA/TS-N domain 373 406 IPR015940 -
Vvi19g751 410 CDD UBA_scDdi1_like 373 408 - -
Vvi19g751 410 Gene3D Acid Proteases 175 321 IPR021109 -
Vvi19g751 410 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Vvi19g751 410 Gene3D - 1 85 - -
Vvi19g751 410 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 408 - -
Vvi19g751 410 PANTHER AT13091P 1 408 - -
Vvi19g751 410 CDD RP_DDI 181 304 IPR019103 GO:0004190|GO:0006508
Vvi19g751 410 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Vvi19g751 410 MobiDBLite consensus disorder prediction 328 362 - -
Vvi19g751 410 SMART ubq_7 1 72 IPR000626 GO:0005515
Vvi19g751 410 SUPERFAMILY Acid proteases 182 297 IPR021109 -
Vvi19g751 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 410 IPR015940 -
Vvi19g751 410 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g751 K11885 DDI1; DNA damage-inducible protein 1 - vvi:100248128 764.607
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1285 . Csa07g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01025 Cme01g01107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005655 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38