Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g755 ATGAGCGACTCCGCATACAGAGTCGAAACCACGTCGCGCCTCGCCCAATGGAGGATCGACAACCTGGCTTCCTGCACTTACCGCAAGTCCGATCCTTTCAAGATCGGCAAGTGGAATTGGCATTTATCTATAGAGAAGAATCGGACATTATCTGTTAAACTGTACCCGGAAACATCAAATTTAACCAGAGACAACCCCCCAATTGCGTCTTTCATCATCAGAGTGCTCTCTTCTGTGGGAGATCGCAAGGCTTTGGTTCATCCAGAAATAACAGACAAGCAGCTCAAGAATAACGACGATTTCGTTTGGGCGATTGAGGTTCCATTAACTGGGAAATTCATTGTCGACGTTGAATTCCTAGATTTGAAGACTTCATCACCAAACGGTGGAGAGCCTTGCTCCATCTGGGCTGAAGGATTCGCTCAAAAAAGATCAAGTACAACAGCTCTTGCATCCCTTGGCCGGATGTTGTCAGAAAACATCCACACAGACATTATAATTAATGCTTCTGATGGAAGCATTGGAGCTCATCGTGCGGTTCTGGCCTCAATATCCCCTGTTTTTCGCAGCATGTTTTCACATGACCTCAAAGAGAAAGAACTATCCACCGTAAACATCTCTGACATGTCAATTGAAGCCTGCCAAGCTTTTCTCAATTACATTTATGGGAATATCCAACACGATGAATTTCTGATCCACAGGCTGCCACTTCTCCGTGCAGCTGATAAGTACGACATTGAAGACCTGAAAGAGGCATGCCATGAGAGTCTTTTAGAAGATATTGACACTAAGAATGTGCTGGAGAGGCTCCAAAATGCATCTCTTTATCAATTTGTGCAGATAGGGACCTGA 852 44.84 MSDSAYRVETTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLSIEKNRTLSVKLYPETSNLTRDNPPIASFIIRVLSSVGDRKALVHPEITDKQLKNNDDFVWAIEVPLTGKFIVDVEFLDLKTSSPNGGEPCSIWAEGFAQKRSSTTALASLGRMLSENIHTDIIINASDGSIGAHRAVLASISPVFRSMFSHDLKEKELSTVNISDMSIEACQAFLNYIYGNIQHDEFLIHRLPLLRAADKYDIEDLKEACHESLLEDIDTKNVLERLQNASLYQFVQIGT* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9756851 9758439 - Vvi19g755 Vvi19g755 782254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g755 283 PANTHER OS08G0495500 PROTEIN 1 281 - -
Vvi19g755 283 Gene3D Potassium Channel Kv1.1; Chain A 140 282 IPR011333 -
Vvi19g755 283 PANTHER OS08G0495500 PROTEIN-RELATED 1 281 IPR044714 -
Vvi19g755 283 CDD MATH 17 103 IPR002083 GO:0005515
Vvi19g755 283 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Vvi19g755 283 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Vvi19g755 283 SUPERFAMILY POZ domain 146 259 IPR011333 -
Vvi19g755 283 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Vvi19g755 283 SMART BTB_4 163 261 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g755 K10523 SPOP; speckle-type POZ protein - vvi:100243007 556.984
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g755 . . Bda07g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01024 Cme01g01105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007616 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14441 PF00651 BTB 2.30E-21 CL0033 Vvi TR