Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g771 ATGTTGCATTTGAGTCATATTAATGTCTCGGATACTGCAGCGAAAATTTTAAAATATAATAATAAAAAGAAAAATATTAAGAAGAAAAAGAAGGGGGGGACGGGTGATTCAATGGGTCAAATTCTCTCCGTTATTATTCGCTGGTTGTGGGGTGAAAAAGATGATAAAAAGAAGCCAAGTGAAAAACTACCCCTGATTTCTCCGCCGAGATTTGCCTCAGACACCAATTCTTCAAGCTCAAGGCCTGCGTTGCCACCGAATCCATTTACTTCTCCACCGAGCTTAGAATCATGTAGGGACTACGCATTGCAGACAAATCTACGGACTCATCCTCCGCCTCCAGTGAGCTCTAGCTCTAACTCTAGCTCTAGCCCATTCAGGCACTCCAAAACAAGTAGTGCATCACGTCTTCAGCCAACACTACAGACTCATCATCAACTAAACTCGAGCTCATGTGGCTTCTCTATCGCGACTGTATCATCCCCTGTCCAGCCAAAACTAGAGACTCCCCAACAACTAAGTTCTAGCTCATGCAGCCAATCCAGCACAACCCAATTTTACCCAAAACTAGTGCAGACTCATCAGCCACTCAACTTGAGCTCATGTGGCCTCTCCAGCACGACTGTATCATCCCCTGTCCAACCAAAACTAGAGACTCACCAACAGCTAGGTTCTAGCTCATGCAGCCAATCCAGCACAACCTCTTTTTACCCAAAACCAGTGCAGACTCCTCAGCCACTCAGCTCCAACTCGTGTGGCCTATCCAGGCCAAGTGGTACTTCTCATGCTCAGCCAAAGATACAGACTCATCCTTCACTACTCTCTAGCTCCTCCAGCCACTCTAGCGTGAGTGGTGCATCCCATTTCCAGCCAAATCCAGTGACTCTTCCACTGAGCTCTGTCCCAAGCAGCAACTCAGGCATCAATGGTGCATCGCAGCGAAACTCTCTGGGTTTTCCACTGAGCTTGGAATCACGCAGCAATTCCAGGTCTGATGATGCATTGGATCTGTTAATTCCTGCAAAATTTAAAGTCGAAGTTGTAGGTGATGAGAAGCAAGTTTCTGCACGGCTCCACCATTACGACATAATTGAAGAAAACGAAGAACGAACCAGAGGAGCGGTAGGAAAAAATTGGTGGGACTACAGCAGCTGTGAAGAAGACCTAGAGGAAGGAAAGCTTGGAGTAAGATGGATAAAGCACTACAGCAGTAAATACAAAATATTGCTGGTGGGTGAAGGGGACTTCTCATTCTCTGCGTCTTTGGCTGTGGCTTTTGCTTCTGCTACAAACATAACCGCTACTTCTCTTGATTCTATAGAGTTTTTGAGCACAAACTATAGGCATGCCTTGTCCAACATCGATTCACTACGGAGCTTGGGAGCTAAGGTCATGCATGATGTTGATGCCACCAAAATGGCACACGTTTTCCCATTCAATTGCATGCGTTTTGATCGAGTTGTCTACAACTTCCCGCTGGCTGGATTTTTTCCCAATGCATCTAGGGAAGATAAGATCCGGCGAAATCAAATGCTGGTACAGCTGTTTTTAGAAAATGCTAAGAAGATGATTCACATAGATGGAGAAATCCACATTACTCACAAAAGCAATGGCTTCTTTTATGAGTGGAATTTGGAATTTCTAGCCTCAAGAGTTGGGCTTCGACTTATAGAAGAAGAGCCCTTTAATTTTATGGACTACCCAGGGTACCGCACCAAGTATGGCTTTGGGGGTGACAATAACTTCAACTGCAATCCCAGCAGAACATACAAATTTGGGCATAAAAAACTGAATGAGAATGTGTGGATGTGA 1812 44.98 MLHLSHINVSDTAAKILKYNNKKKNIKKKKKGGTGDSMGQILSVIIRWLWGEKDDKKKPSEKLPLISPPRFASDTNSSSSRPALPPNPFTSPPSLESCRDYALQTNLRTHPPPPVSSSSNSSSSPFRHSKTSSASRLQPTLQTHHQLNSSSCGFSIATVSSPVQPKLETPQQLSSSSCSQSSTTQFYPKLVQTHQPLNLSSCGLSSTTVSSPVQPKLETHQQLGSSSCSQSSTTSFYPKPVQTPQPLSSNSCGLSRPSGTSHAQPKIQTHPSLLSSSSSHSSVSGASHFQPNPVTLPLSSVPSSNSGINGASQRNSLGFPLSLESRSNSRSDDALDLLIPAKFKVEVVGDEKQVSARLHHYDIIEENEERTRGAVGKNWWDYSSCEEDLEEGKLGVRWIKHYSSKYKILLVGEGDFSFSASLAVAFASATNITATSLDSIEFLSTNYRHALSNIDSLRSLGAKVMHDVDATKMAHVFPFNCMRFDRVVYNFPLAGFFPNASREDKIRRNQMLVQLFLENAKKMIHIDGEIHITHKSNGFFYEWNLEFLASRVGLRLIEEEPFNFMDYPGYRTKYGFGGDNNFNCNPSRTYKFGHKKLNENVWM* 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10267543 10270507 - Vvi19g771 Vvi19g771 782270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g771 603 MobiDBLite consensus disorder prediction 93 144 - -
Vvi19g771 603 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 409 573 IPR019446 GO:0070042|GO:0070475
Vvi19g771 603 MobiDBLite consensus disorder prediction 56 144 - -
Vvi19g771 603 MobiDBLite consensus disorder prediction 203 312 - -
Vvi19g771 603 PANTHER PHENYLALANYL-TRNA SYNTHETASE 278 596 - -
Vvi19g771 603 MobiDBLite consensus disorder prediction 70 84 - -
Vvi19g771 603 PANTHER PHENYLALANYL-TRNA SYNTHETASE-RELATED 278 596 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g771 K19307 BMT5; 25S rRNA (uracil2634-N3)-methyltransferase [EC:2.1.1.313] - vvi:104877639 1070.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016605 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7