Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g773 ATGGGTCAAATTCTCTCCATTATTATTCGCTGGTTGTGGGGTGAAAAAGATGATAAAAAGAAGCCAAGTGAAAAACTACCCCTGATTTCTCCACCGAGATTGGGCTCAGACACCAACTCTTCAAGCTCAAGGCCTGCGTTGCAACCAAATCCAATTACTTCTCCACCGAGTTTAGGATCATGTAGGGACTACACATTGCAGACAAATCTACGGACTCATCCTACGCCTCCACTGAGCTCTAGCTCTAACTCTAGCTCTAGCTCTAACCCATTCACCCACTCCAAAACAAGTGGTGCATCACGTCTTCAGCCAACACTGCAGACTCGTCATCAACTCAACTCGAGCTCAGGTGGCCTCTCTATCGCGACTGTATCATCCCCTGTCCAGCCAAAACTAGAGACTCACCAACAACTGAGTTCTAGCTCATGCAGCCAATCCAGCACAACCCATTTTTACCCAAAACCAGTGCAGACTCATCATCAACTCAACTTGAGCTCAGGTGGCCTCTCTATCGCGACTGTATCATCCCCTGTCCAGCCAAAACTAGAGACTCACCAACAGCTAAGTTCTAGCTCATGCAGCCAATCCAGCACAACCCATTTTTACCCAAAACCAGTGCAGACTCCTCAGCCACTCACCTCCAACTCGTGTGGCCTATCCAGGCCAAGTGGTACTTCTCATGCTCAGCCAAAGATACAGACTCATCCTTCACTACTCTCTAGCTCCTGCAGCCACTCTAGCGTGAGTGGTGCATCCCATTTCCAGTCAAATCCAGTGACTCTTCCACTGAGCTCTGTCCCAAGCAGCAACTCAGGCATCAATGGTGCATCGCAGCGAAACTCTCTGGGTTTTCCACTGAGCTTGGACCCACGCAGCAATTCCAGGTCTGATGATGCATTGGATCTGTTAATTCCTTCAAAATTTAAAATCCAAGTTGTAGGTGATGAGAAGCAAGTTTCTGCACGGCTCCACCATTACAACATAATTGAAGAAAACGAAGAACGAACCAGAGGAGTGGTAGGAAAAAATTGGTGGGACTGTAGCAGCTGTGAAGAAGACCTAGAGGAAGGAAAGCTTAGAGTAAGATGGATAAAGCACTACAGCAGTGAGTACAAAATATTGCTGGTGGGTGAAGGGGACTTCTCATTCTCTGCGTCTTTGGCCGTGGCTTTTGCTTCTGCTACAAACATAACCGCTACTTCTCTTGATTCTATAGAGTTTTTGAGCACAAACTATAGGCATGCCTTGTCCAACATCGATTCACTACGGAGCTTGGGAGCTAAGGTCATGCATGATGTTGATGCCACCAAAATGGCACACGTTTTCCCATTCAATTGCATGCGTTTTGATCGAGTTGTCTACAACTTCCCGCTGGCTGGATTTTTTCCCAATGCATCTAGGGAAGATAAGATCCGGCGAAATCAAATGCTGGTACAGCTGTTTTTAGAAAATGCTAAGAAGATGATTCACATAGATGGAGAAATCCACATTACTAACAAAAGCAATGGCTTCTTTTATGAGTGGAATTTGGAATTTCTAGCCTCAAGAGTTGGGCTTCGACTTATAGAAGAGGAGCCCTTTAATTTTATGGACTACCCAGGGTACCGCACCAAGTATGGCTTTGGGGGTGACAATAACTTCAACTGCAATCCCAGCAGAACATACAAATTTGGGCATAAAAAACTGAATTAG 1692 45.86 MGQILSIIIRWLWGEKDDKKKPSEKLPLISPPRLGSDTNSSSSRPALQPNPITSPPSLGSCRDYTLQTNLRTHPTPPLSSSSNSSSSSNPFTHSKTSGASRLQPTLQTRHQLNSSSGGLSIATVSSPVQPKLETHQQLSSSSCSQSSTTHFYPKPVQTHHQLNLSSGGLSIATVSSPVQPKLETHQQLSSSSCSQSSTTHFYPKPVQTPQPLTSNSCGLSRPSGTSHAQPKIQTHPSLLSSSCSHSSVSGASHFQSNPVTLPLSSVPSSNSGINGASQRNSLGFPLSLDPRSNSRSDDALDLLIPSKFKIQVVGDEKQVSARLHHYNIIEENEERTRGVVGKNWWDCSSCEEDLEEGKLRVRWIKHYSSEYKILLVGEGDFSFSASLAVAFASATNITATSLDSIEFLSTNYRHALSNIDSLRSLGAKVMHDVDATKMAHVFPFNCMRFDRVVYNFPLAGFFPNASREDKIRRNQMLVQLFLENAKKMIHIDGEIHITNKSNGFFYEWNLEFLASRVGLRLIEEEPFNFMDYPGYRTKYGFGGDNNFNCNPSRTYKFGHKKLN* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10302481 10305368 - Vvi19g773 Vvi19g773 782272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g773 563 PANTHER PHENYLALANYL-TRNA SYNTHETASE-RELATED 245 561 - -
Vvi19g773 563 MobiDBLite consensus disorder prediction 18 103 - -
Vvi19g773 563 MobiDBLite consensus disorder prediction 129 153 - -
Vvi19g773 563 MobiDBLite consensus disorder prediction 180 244 - -
Vvi19g773 563 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 374 538 IPR019446 GO:0070042|GO:0070475
Vvi19g773 563 MobiDBLite consensus disorder prediction 33 103 - -
Vvi19g773 563 PANTHER PHENYLALANYL-TRNA SYNTHETASE 245 561 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g773 K19307 BMT5; 25S rRNA (uracil2634-N3)-methyltransferase [EC:2.1.1.313] - vvi:100242885 1072.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g773 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016605 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7