Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g778 ATGTCTCTGTCCAATCTCCAAGAAACACTCGACCTTAGCATCCTGAAGCGTAGGGTTTCGCCCCAAGCTAAATGTTCGGAGAACATTTGGTTCCTAGGTCAGCCGCTGTTTGATTCCGGTTTTTCCTCCTATATATATATATACATATTTTTGCCCAATTACACTGCATATAAGTGCACTATACAAATTGTCTCTGTCTCCAACCCTCTCCGTCTCTCTGGAATGGCGATTTCCTCTTCCTTCCGATTATTCTCAGCCAAAATCCCGCAATCTCTGCATCTTCCCTATCTCTCACTCTCCAAAACCCTAATTTCGTCCACCTCAATTCTCCCAAGATTTTCATTTTTCCGACCGATTTCCATCTCATTTCAGAGGGTTCCTACCAAACCCTCATCCTCATCATCGTCGCCCTCTTTGACCTCCGCTTCTCTGCAACCCATTGAAGACCTCCCTCCAAAGCTTCAAGAAATCGTCAAACTCTTCCAAGCAGTGGAAGAGCCCAAGGCTAAGTACCAACAGCTCTTGTTCTACGGCAAAAACCTCACCCCACTTGATGCCCAGTACAAGACCACTGAAAACAAGGTTCAGGGATGTGTTTCTCAGGTCTGGGTCCGTGCCTACCTTGATTCGGATAAGAACGTGGTCTTTGAAGCTGATTCTGACTCGGTGCTCACCAAGGGGCTCGCGGCTTTGCTCGTTCAGGGACTTTCGGGCAGGCCGGTTGAGGAGGTTGTGCGGGTCTCGCCCGATTTTGTGGTCTTGCTTGGGTTGCAGCAGAGTCTCACACCTTCGAGGAATAATGGGTTCTTGAATATGTTGAAGTTGATGCAGAAAAAGGCGCTGGAGCTTTATATAGAAGCTAAAAGGAGCAGTGAGTTAACGGGTGTTGAGGATCCGAAAGTGGGTGTGGCTGGGACCGGTGAAACTGGATTGAGTTCTGAAAGAGCTCTTAGTCCTATTGAATTGCTGGTAGAGGATATATCTTATCAGCATGCTGGACATGCAGGTGTTAGGGGAAGTGATGGGGAGACACATTTTAATCTCAAGGTAGTTTCAGAGGAATTCGAAGGGAAGAGTTTGGTTAAGAGGCATAGAGTTGTTTATGATTTGTTGCAAGAGGAGTTGCAGAATGGACTACATGCATTGTCAATAGTGGCAAAGACACCATCTGAAGTTAGTGAAATAAAAAGTAGACAGGGAAATCAACTTGGGAATCTATGTTGA 1224 46.16 MSLSNLQETLDLSILKRRVSPQAKCSENIWFLGQPLFDSGFSSYIYIYIFLPNYTAYKCTIQIVSVSNPLRLSGMAISSSFRLFSAKIPQSLHLPYLSLSKTLISSTSILPRFSFFRPISISFQRVPTKPSSSSSSPSLTSASLQPIEDLPPKLQEIVKLFQAVEEPKAKYQQLLFYGKNLTPLDAQYKTTENKVQGCVSQVWVRAYLDSDKNVVFEADSDSVLTKGLAALLVQGLSGRPVEEVVRVSPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKALELYIEAKRSSELTGVEDPKVGVAGTGETGLSSERALSPIELLVEDISYQHAGHAGVRGSDGETHFNLKVVSEEFEGKSLVKRHRVVYDLLQEELQNGLHALSIVAKTPSEVSEIKSRQGNQLGNLC* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10332462 10337676 - Vvi19g778 Vvi19g778 782277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g778 407 Gene3D - 312 395 IPR036065 -
Vvi19g778 407 PANTHER - 96 294 - -
Vvi19g778 407 PANTHER - 314 393 - -
Vvi19g778 407 PANTHER SUFE-LIKE PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL 314 393 - -
Vvi19g778 407 PANTHER SUFE-LIKE PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL 96 294 - -
Vvi19g778 407 SUPERFAMILY BolA-like 315 396 IPR036065 -
Vvi19g778 407 Gene3D - 150 291 - -
Vvi19g778 407 SUPERFAMILY SufE/NifU 148 282 - -
Vvi19g778 407 Pfam Fe-S metabolism associated domain 159 278 IPR003808 -
Vvi19g778 407 Pfam BolA-like protein 315 391 IPR002634 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g778 K22066 BOLA1; BolA-like protein 1 - vvi:100242888 433.335
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01016 Cme01g01093
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010158 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32