Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g78 ATGGAGCCAAACACGTTATACCGTAACCTTCGATTCGATGATTACCCACCAGATGACCTGATCTCTGACAAGGCTTCAGGAGAGGTTCAGGAACTCAGGGAAGGCAGTGAGCCTATGCTAACTGATAATTGTGTCAAACACGAAAAAATTCAACTTAGAGATTGTGAAAGCAAATCACCTAAAAGCACTGGGGTAGATAATGATGTGCTAAATGATTCGTTTGTTGGCCATAAGAAACCAGGTAAATATTTTTATTACGACTTGCCACTTTCTGAAGAAACTGGGCCTTGGATACCTGTCTCTGTGCCTCCCATGTTGGAGGGTGAAAATGAAGAATGGAGTAAAGCCCTCGGTGTAAATGGGGGTTACCTTCCGGATGGAGACATGGGATGGAATCAGTTAATTGGCGAAGATAAGGAGCTGACCATGTGGGATGTGGTTACTGATATGTTACTTGCGGCCCAAGGGAAAGTGAATGCTATCGCTTCAGGAGATATCCATAGATGTAGAGTCTCATGGATATCGAACCATCTTCTTGAGCAAGCTTGGAAAGAGATGGCTGAAACTCTTACGGAGGTTAATTTGAGTAACATAAAGGAAATTATTGAAGCAGATCCACCAAAATGGTTGCCTGACAGTGCCGCTTCTGCTTGCATGCTGTGTAATGTGCGTTTCCATCCTATAATGTGCTCCAGGCACCACTGTCGATTTTGTGGGGGGATATTTTGTAATGAATGCTCTAAGGGGAGGAGTTTGTTGCCTATAAAGTTCCGCTCTGGGAACCCACAACGGGTCTGTGATGTCTGCTGTGTGAGGCTTGAATCTGTTCAGTCATACCTAATGGACCAAGTAAGTCGAGCTGCCCAGTCGCCAACCTATGACCTGACAGACCTCAGCACTTTGAGATCATGGCTTAATTTTCCATGGGGCCAGTCTATGGAATATGAGATTTATAAGGCAGCAAACACCATTCGGGGTTATAATAAGGTTGGCTCTCTTACACCTGAAAAGTCAATACCAGAGGCCATTCTAAAACAGGCAAAAGGCCTTGCAATCCTTACTGTTGCAAAGGTCGGCGTGATGGTGACTTATAACATTGGAACAGGGCTGGTCATTGCTCGTAGAGAAGATGGATCTTGGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGGCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCTGTCAAGACATTTAGTGGAAATATGCACTTCTCAGTTGGAGCAGGTTTGAGTGCTGCTGTGGGTATTGCTGGACGTTCTGCTGAAGCTGATGTTCGTGCTGGTGATGGTGGTTATGCTGCTTGCTATACCTACAGCTGCTGTAAAGGTGCATTTGTTGGGTGCTCCCTCAAAGGGAACATTGTCACAACCCGCTCACAAGAAAATTGCAGATTTTATGGCAACCCATCAATTAGTGCATCAGATATTCTTCTTGGGTCACTGCCTAGGCCTCCTGCAGCTGCCACTCTCTATCATGCACTGTCTGATCTATTCCTCAAGTTTGAGAGGTGA 1569 45.32 MEPNTLYRNLRFDDYPPDDLISDKASGEVQELREGSEPMLTDNCVKHEKIQLRDCESKSPKSTGVDNDVLNDSFVGHKKPGKYFYYDLPLSEETGPWIPVSVPPMLEGENEEWSKALGVNGGYLPDGDMGWNQLIGEDKELTMWDVVTDMLLAAQGKVNAIASGDIHRCRVSWISNHLLEQAWKEMAETLTEVNLSNIKEIIEADPPKWLPDSAASACMLCNVRFHPIMCSRHHCRFCGGIFCNECSKGRSLLPIKFRSGNPQRVCDVCCVRLESVQSYLMDQVSRAAQSPTYDLTDLSTLRSWLNFPWGQSMEYEIYKAANTIRGYNKVGSLTPEKSIPEAILKQAKGLAILTVAKVGVMVTYNIGTGLVIARREDGSWSPPSAISSFGIGWGAQAGGELTDFIIVLRTNNAVKTFSGNMHFSVGAGLSAAVGIAGRSAEADVRAGDGGYAACYTYSCCKGAFVGCSLKGNIVTTRSQENCRFYGNPSISASDILLGSLPRPPAAATLYHALSDLFLKFER* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 884761 893703 + Vvi19g78 Vvi19g78 781577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g78 522 Pfam Las17-binding protein actin regulator 390 514 IPR007461 -
Vvi19g78 522 PANTHER RING/FYVE/PHD-TYPE ZINC FINGER FAMILY PROTEIN ISOFORM 2 46 522 - -
Vvi19g78 522 Pfam FYVE zinc finger 208 273 IPR000306 GO:0046872
Vvi19g78 522 SUPERFAMILY FYVE/PHD zinc finger 207 283 IPR011011 -
Vvi19g78 522 CDD SYLF_FYVE 315 516 - -
Vvi19g78 522 PANTHER SH3YL1 PROTEIN 46 522 - -
Vvi19g78 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 286 IPR013083 -
Vvi19g78 522 SMART fyve_4 204 275 IPR000306 GO:0046872
Vvi19g78 522 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 212 274 IPR017455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g78 K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1 - vvi:100246883 1078.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g262 Vvi19g78 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g78 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004610 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 2 1 42