Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g782 ATGGCTGCGCTGCTGAGAAAGGTTTGGGAATCGGTTTCGAGAAGTTCAAAGGCGACCTCTGAATCGTCTGATCGGCGCGTGGTGGTTCAGTCGTCGACGGGCGCATTCAGTCACATACCTTTCGATGTCTTCATGCATATTCTCCAGTTTCTCGAGCCCAGGGAAGTTGCGAAGTTGAGCCTTGTTTGCAAGTATTGGAAATTTCTCGTTTCCGATAATCAACTCTGGCTTTACTTGCTCCAGAAGGAACAGAACCAACCCGGTTCTTGGGATTCACTTGTTTTCGCCGAGACCCATTTGCAGATGGGCTACCCTCTTCTGACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCGACGAGCAAAAGCCCCGGGCGCTATTATTATTGATGGTGGGTCTGGCTATTGCAAGTATGGATGGAGCAAATATGATACTACCACCGGGATGTCGGCAACATTTTTAGAATTTGGAAACATTGAAACGCCAATATACTCCAGGCTTAGACATTTTTTGGCAACGATTTATAGCAGAATGCACGTGAAGCCATCTGCACAACCAATTGTCTTATCTGTTCCAATCTGCCATTATGACGATAATGAATCTGCTAAAGCATCTCGAAGGCAGCTAAAGGAAACCATTCATTCAGTCTTGTTTGATATGAACGTTCCTGCTGTTTGTGCCATCAACCAGGCAACCTTAGCTTTGTATGCAGCAAAGCAAACTTCAGGAATTGTTGTTAATATTGGTTTCCACTGCACATCTATTGTTCCAATTTTACATGGAAAAGTGATGCGCAAGGTGGGTGTGGAAGTTGTGGGAATGGGAGGATTGAAACTCACTGGATTTCTCAGGGAGCGGATGCAGCAGCAAAATATGAACTTTGAGTCACTTTACACTGTTCGCTCACTGAAAGAGAATCTGTGTTATGTTGCTGCTGACTATGAAGCTGAGCTATCCAAAGATACACGGGCATCATTTCAAGTTGCATCAGAAGGTTGGTTTACTCTTTCGAGGGAGCGCTTTCAAACAGGAGAGATACTATTCCAGCCAAGAATGGCAGGAGTCACAATGATGGGTTTGCACCAGGCAGTAGCACATTGCATGGACCATTGCCAATCTGCTGCAATAACAGCTGATGAATCTTGGTTCAAGACTGTAGTCTTAGCAGGAGGAAGTGCATGTTTACCAGGACTAGCAGAAAGGTTAGAAAAGGAACTGCATGGACTTGTTTGCCCATCTGTAGCCAATGGCATTAGAGTCCTCCCTCCTCCTTATGGTGAAAAATCTGCATGGTTTGGGGCAAAGATTATCAGCAATTTGAGCACCTTCCCTGGGAGTTGGTGTATGACAAAGAAGCAGTTCCGACCCAAGGTGAGACGCAACCTCATGGTGACAATATTTAACTAG 1422 45.08 MAALLRKVWESVSRSSKATSESSDRRVVVQSSTGAFSHIPFDVFMHILQFLEPREVAKLSLVCKYWKFLVSDNQLWLYLLQKEQNQPGSWDSLVFAETHLQMGYPLLTFNDQMPQLSFMHIFGRRAKAPGAIIIDGGSGYCKYGWSKYDTTTGMSATFLEFGNIETPIYSRLRHFLATIYSRMHVKPSAQPIVLSVPICHYDDNESAKASRRQLKETIHSVLFDMNVPAVCAINQATLALYAAKQTSGIVVNIGFHCTSIVPILHGKVMRKVGVEVVGMGGLKLTGFLRERMQQQNMNFESLYTVRSLKENLCYVAADYEAELSKDTRASFQVASEGWFTLSRERFQTGEILFQPRMAGVTMMGLHQAVAHCMDHCQSAAITADESWFKTVVLAGGSACLPGLAERLEKELHGLVCPSVANGIRVLPPPYGEKSAWFGAKIISNLSTFPGSWCMTKKQFRPKVRRNLMVTIFN* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10434341 10444022 - Vvi19g782 Vvi19g782 782281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g782 473 Gene3D - 236 434 - -
Vvi19g782 473 Gene3D - 176 459 - -
Vvi19g782 473 SUPERFAMILY F-box domain 27 93 IPR036047 GO:0005515
Vvi19g782 473 CDD NBD_sugar-kinase_HSP70_actin 132 268 - -
Vvi19g782 473 Pfam Actin 178 458 IPR004000 -
Vvi19g782 473 Gene3D Actin; Chain A, domain 4 279 362 - -
Vvi19g782 473 PANTHER ACTIN-RELATED PROTEIN 8 90 466 - -
Vvi19g782 473 SMART actin_3 129 468 IPR004000 -
Vvi19g782 473 Gene3D - 24 104 - -
Vvi19g782 473 SMART fbox_2 39 79 IPR001810 GO:0005515
Vvi19g782 473 Pfam F-box-like 36 76 IPR001810 GO:0005515
Vvi19g782 473 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Vvi19g782 473 PANTHER ACTIN 90 466 IPR004000 -
Vvi19g782 473 SUPERFAMILY Actin-like ATPase domain 130 251 IPR043129 -
Vvi19g782 473 SUPERFAMILY Actin-like ATPase domain 246 458 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g782 K16616 PARP8; actin-related protein 8, plant - vvi:100254870 958.747
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g782 . . . . . . Bma10g00615 . . Cmo06g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1269 Cone15ag1295 . . . . Blo07g00858 . Bda05g00660 . . Bpe03g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006156 1 1 1 4 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 0 1 1 1 38