Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g785 ATGTCGACTCATCATCATCTGAGTGAGGAGGACCCAACAACTCCCACAGTATATTCAGCGCAACAACAGCCTCAGAGTGAGGCCGCCACGCCTACACATGTCTCCGCCCACAGGCCCTATCCTGAGGCTGCTGCCCAGTACCAGGAGGTTGTTCAGAGTGCTGATCTTTTCTGGCAGACCCTCAAGGATTTTCACAGATCTTTTGGTACCAAGTTCATGGTTCCCACTACAGGAGGAAAGGCTCTAGATCTACACCGCCTTTTTGTGGAGGTTACATCTCGTGGTGGCCTAGAAAAGGTTATTCGAGATCGCAAATGGAAGGAAGTGACTACAGTTTTCAAATTCCCAACAACAATCACCAGTGCATCATTTGTTTTACGGAAGTACTATTTGTCATTACTTCATCACTATGAGCAAGTTTATTACTTCCGCAAGCAATCCTTTCCAATCTCAATGGCTGATCCTCTAAACAGCAGCCCCATCAATGGGTCAGCTACTACACCTGTTTTTCAGGACAGTGCCACTACGAATGATTTGCCAGTGAGCCCTAGATTGCAGCCTGGCTGTTTGGTGACTGGAACTATAGATGGAAAATTTGATAACGGATATCTAGTTTCTGTGAATTTGGGTTCTGATGTGCTGAAAGGTGTCCTGTATCATATTCCTAATAATGAGTCACACATGTCTCGGAGTTCTAACGCTTCAGCTGTACCTCCTCCCCGTAACTGGAAGAGATCCCAGCTGGCACTACGGGATCCCTCTCGGCCCAAGCGAAGCCAGAGTGGTTACAACTTCTTCTTTGCAGAGAACTATGCCAGGTTGAAGCCTTTGTACTCTGGTCAAGAGAGGGCCATCAGTAAGAAGATTGGTTTCCTATGGAACAGACTCACAGATGCTGAAAAACAGGTCTATCAAGAAAAAGGCATGATAGACAAGGAGAGATACAAGACTGAAATGTTGGAGTACAGATCCGCATATGATTCAAAACCTCAATAG 996 46.08 MSTHHHLSEEDPTTPTVYSAQQQPQSEAATPTHVSAHRPYPEAAAQYQEVVQSADLFWQTLKDFHRSFGTKFMVPTTGGKALDLHRLFVEVTSRGGLEKVIRDRKWKEVTTVFKFPTTITSASFVLRKYYLSLLHHYEQVYYFRKQSFPISMADPLNSSPINGSATTPVFQDSATTNDLPVSPRLQPGCLVTGTIDGKFDNGYLVSVNLGSDVLKGVLYHIPNNESHMSRSSNASAVPPPRNWKRSQLALRDPSRPKRSQSGYNFFFAENYARLKPLYSGQERAISKKIGFLWNRLTDAEKQVYQEKGMIDKERYKTEMLEYRSAYDSKPQ* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10490144 10498164 + Vvi19g785 Vvi19g785 782284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g785 331 MobiDBLite consensus disorder prediction 1 35 - -
Vvi19g785 331 SMART hmgende2 255 324 IPR009071 -
Vvi19g785 331 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Vvi19g785 331 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 329 - -
Vvi19g785 331 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 256 323 IPR009071 -
Vvi19g785 331 SUPERFAMILY ARID-like 49 152 IPR036431 GO:0003677
Vvi19g785 331 SMART ARID_2 48 138 - -
Vvi19g785 331 Gene3D High mobility group box domain 242 330 IPR036910 -
Vvi19g785 331 Pfam HMG (high mobility group) box 256 323 IPR009071 -
Vvi19g785 331 SUPERFAMILY HMG-box 249 325 IPR036910 -
Vvi19g785 331 SMART bright_3 52 143 IPR001606 GO:0003677
Vvi19g785 331 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 22 329 - -
Vvi19g785 331 Gene3D - 39 153 IPR036431 GO:0003677
Vvi19g785 331 CDD ARID_HMGB9-like 55 138 IPR045303 GO:0003677
Vvi19g785 331 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Vvi19g785 331 CDD HMGB-UBF_HMG-box 256 319 - -
Vvi19g785 331 MobiDBLite consensus disorder prediction 12 32 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g785 - - - vvi:100244598 676.781
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g785 . . . . . . . Bma13g01143 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1272 Cone15ag1298 . . . . . . . Bda12g00990 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016229 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14442 PF01388 ARID 3.00E-18 CL0123 Vvi TR