Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g786 ATGACCCTTGACTGGGATTCTTCTTCTGGTTTCGCTTCCATGGACGATGATCAAAAGAAAGATTACTGTAAAATACTGGAAGGAGGTGGACGGGAGGATCACGTCGCTTTAGAAAAGGGCGCGCTGAAAGAGAAGCCAGCGGCGGCCAACGGAGGGCCAATGATGAAGCTCAAGCATCAGAGCTCCTGGGAGTTGAATGGGGAAGATAACGTCCGGGAACCTCGGATCTGCAGCGTCTGCAAAAGGGAGTTTAGCTCCGGTAAGGCTTTGGGGGGTCATATGAGAGTTCACATTCAGGCCAGCAAGAAAGAGGACGAGCTTGTTAACAAGAAGACCGCCAAGCTCAAGAAACAATCCGTGAATGGTCCTGGTTCCACAACGAACAATGCCGATGACACCACTTGTTCCCTTTGCGGCAAGAATTTTCCGTCTAGGAAGTCGCTCTTTGGGCACATGAGATGCCACCCCGAGAGGGAATGGAGGGGAATTCAGCCACCGCCCACCGCCAAAAACAGTTCATCTTCGACCTTGTCTGAGCTTCTTCCCCGAATAATGGATGATCAGTTTGATTCGGCTACTACTGTTACCAAGTGTGTTACTGATTTGCAGCAGTCTCTGTCAGGATCCGGATGGTCAGTCACTGATAGGAGAGGCCGGAAAAGCTTTCTTCCTGATGCTGACTCAGATGCTGATGCTGATGCAGCTTATAATCTCTTGATGCTCGGCCATGGGGATTTCCTCTATCTTGGGCACCCTCCACACTCTTATCAGCAACAGCAAAGAGTGAAGGAGGAATGTGAGAGCAATTCCCCAACTAACAAGGCCGAAATTGAGGAGAATAACCAATATTTTGAATGCACAGCTGGGTCGAAGAAGAGAGGAATTGAGGCGTCACTCTTCGGCAACATGAAGAATTCTCCAGAGGAAGCTAAGCAGGTTCCTACTACTCCTGATAGGTACAGATGCAGTACTTGCAATAAATCTTTTCCAACTCACCAGGCCTTGGGGGGTCACAGGTCCAGCCATAACAAATTTAAGAACAGTCAAACAATGGATGATTCTGCATCTCATGAAGCTCTAGGATGCAACGATGCAGCTGCTGCCTTAGCTTCCATGCTCAGTACTACACACCAATGCAAGTGCTGCAACAAGACCTTCCCAACTGGTCAGGCTCTTGGAGGCCACATGAGGTGTCACTGGAATGGTCCATCTGAAGCTCCATCCAGCCAAGTCACATCCCCAGGAGAAGCCAGTCAGACTGGTCCTAAACTCCTCCTAGGTTTTGATCTCAACGAGCTCCCCGCCATGGACGAGGAGGATGAAGGTACTGAGTCTGTCACTCTTGCAGCTGGTGATGCATCTTCCTCTCACAATTCCGTTAACTAA 1386 49.57 MTLDWDSSSGFASMDDDQKKDYCKILEGGGREDHVALEKGALKEKPAAANGGPMMKLKHQSSWELNGEDNVREPRICSVCKREFSSGKALGGHMRVHIQASKKEDELVNKKTAKLKKQSVNGPGSTTNNADDTTCSLCGKNFPSRKSLFGHMRCHPEREWRGIQPPPTAKNSSSSTLSELLPRIMDDQFDSATTVTKCVTDLQQSLSGSGWSVTDRRGRKSFLPDADSDADADAAYNLLMLGHGDFLYLGHPPHSYQQQQRVKEECESNSPTNKAEIEENNQYFECTAGSKKRGIEASLFGNMKNSPEEAKQVPTTPDRYRCSTCNKSFPTHQALGGHRSSHNKFKNSQTMDDSASHEALGCNDAAAALASMLSTTHQCKCCNKTFPTGQALGGHMRCHWNGPSEAPSSQVTSPGEASQTGPKLLLGFDLNELPAMDEEDEGTESVTLAAGDASSSHNSVN* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10503114 10505322 + Vvi19g786 Vvi19g786 782285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g786 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 320 347 IPR013087 -
Vvi19g786 461 Pfam C2H2-type zinc finger 76 97 - -
Vvi19g786 461 Pfam C2H2-type zinc finger 134 157 - -
Vvi19g786 461 Pfam C2H2-type zinc finger 377 400 - -
Vvi19g786 461 Pfam C2H2-type zinc finger 319 343 - -
Vvi19g786 461 ProSitePatterns Zinc finger C2H2 type domain signature. 322 342 IPR013087 -
Vvi19g786 461 Gene3D Classic Zinc Finger 317 399 - -
Vvi19g786 461 Gene3D Classic Zinc Finger 73 155 - -
Vvi19g786 461 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 366 440 IPR044653 GO:0003700
Vvi19g786 461 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 14 353 IPR044653 GO:0003700
Vvi19g786 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 377 399 IPR013087 -
Vvi19g786 461 SUPERFAMILY beta-beta-alpha zinc fingers 376 401 IPR036236 -
Vvi19g786 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Vvi19g786 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Vvi19g786 461 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Vvi19g786 461 ProSitePatterns Zinc finger C2H2 type domain signature. 379 399 IPR013087 -
Vvi19g786 461 MobiDBLite consensus disorder prediction 403 461 - -
Vvi19g786 461 SMART c2h2final6 75 97 IPR013087 -
Vvi19g786 461 SMART c2h2final6 377 399 IPR013087 -
Vvi19g786 461 SMART c2h2final6 320 342 IPR013087 -
Vvi19g786 461 SMART c2h2final6 133 155 IPR013087 -
Vvi19g786 461 MobiDBLite consensus disorder prediction 403 419 - -
Vvi19g786 461 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 14 353 - -
Vvi19g786 461 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 366 440 - -
Vvi19g786 461 SUPERFAMILY beta-beta-alpha zinc fingers 134 342 IPR036236 -
Vvi19g786 461 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g786 - - - vvi:104877642 624.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g786 . . . . Bpe09g00097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00855 Blo10g00890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14443 PF13912 zf-C2H2_6 4.80E-10 CL0361 Vvi TF