Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g788 ATGGTCATGGATGAAGAAGCACCACTGTCTGCTGAACTTCCTAAGAAACTCCCAGCTGTTGATTTCTCTGATTCTGGTGATCCAACCAAGTCCCTCACCATCAAGATAGCAAGCTCTAGCTGCAAACCAGGTAAGGAGTTTCTAGCTCCCCTCATATCTCCAAACATAAAAACCTCAGCTGAACCATCACCATACAACTCTCCATCACTCATCTCTCCACCATCATCAGCATTTGTTTCTGCTCTGCAGTCACCATACATATCTCCAAGAGCTCAAATCCCCAATCTCCAGGAGAACCCAACTCCAGTTATCCACCCGTCTCCGCCCATATCATACTGTGGTTCCCAGTCTGATGACATCCCCAGCTTTCCAGACCCGGCTCCTCCTAGAATCTCCTTCTCATTCCCAGTCCCTCGAATTTCCTTTGCAAAAGGCTCTGTTTCTTCGGCTTCTAATGCAAAACTCAGGAGCTGTGACGTTTACATAGGCTTCCATGGCCAGAATCCCAACTTGGTGCGCATTTGTAAGTGGCTTAAATCAGAGCTCGAGCTCCAGGGAATTGCTTGCTTTATTGCAGATAGAGCAAAGTATTCAGATAATCAAAGTCATGAGATTGCTGATCGTGTCATCTGCTCAGTGACGCATGGCATTGTGGTTGTCACTAGTTCTACCTTCCTCAACCATCACAGCCTAGAGGAAATAAGATTCTTTGCTCAGAAGAAGAACTTGATCCCCTTCTTCTTTGGCACAGACCCTGCTGAGATCATGAGTCTTCTCAACCACAATTCAATTGACAAAGAATGCAAAGAAGCAATTGAAAGATTGATGAAGTCTCATGAATTCAAGCTGGAAGCCAGCGAGGGGAACTGGAGAAGCTGTGTATCTAAAGCCGCTGGGATTTTAAGGGCAAAGCTTGGAAGGAGAAGTGTCGCCGAGAAGGAGCAAGATGGTTCTGTGCCGATTGTTAAAGGAGGAGCAACTGGGCAATGTGATGGTTTTGCAGATGAGGAAAGCGATGCAGGCACAACTAGAGGAGAGAAGTATATTAATTTAGAGGTGGGTAAGTGCAAGGAGCCAACTTTAGAGGCTTGGGTTGAACCAGTAGTTGGAAGAAGCTCATTGAAGAGGCCAAAATACAAGAAATCAAAAAGTGGAAACTATAAGAGCTTTGGTAGCAGCGTGATCTGCATTAATGGAGGTCCTGGTGTTGGAAAAACGGAGCTTGCATTGGAGTTTGCTTACAGGTATTCCCAAAGATACAAGATGGTTTTGTGGGTTGGAGGAGAAGCTCGGTATTTTAGGCAGAGTATATTGAACCTATCACTAAATCTGGGATTGGATGTCAGTGCCGATGCTGAGAAGGAAAGAGGGAGGATCAGAAGTTTTGAGGAGCAGGAATTTGAAGCATTCAAGAGAGTTAAGAGGGAGCTGTTCCGGGACATGCCTTATTTGCTGATTATCGACAACCTTGAGACCGAGAAAGAATGGTGGGAAGGGAAGGATCTACATGATCTAATCCCCAGGAACACCGGAGGGTCCCATGTGATTGTTACCACCAGGCTTTCCAAGAAACAATCCTTTTCTAATGAAAGTTCTGGGATTTTGCTTCTCTGTTTTACAACAAACAAATGGGAAAAGGAACCTCCTTGCCTCTAG 1656 45.35 MVMDEEAPLSAELPKKLPAVDFSDSGDPTKSLTIKIASSSCKPGKEFLAPLISPNIKTSAEPSPYNSPSLISPPSSAFVSALQSPYISPRAQIPNLQENPTPVIHPSPPISYCGSQSDDIPSFPDPAPPRISFSFPVPRISFAKGSVSSASNAKLRSCDVYIGFHGQNPNLVRICKWLKSELELQGIACFIADRAKYSDNQSHEIADRVICSVTHGIVVVTSSTFLNHHSLEEIRFFAQKKNLIPFFFGTDPAEIMSLLNHNSIDKECKEAIERLMKSHEFKLEASEGNWRSCVSKAAGILRAKLGRRSVAEKEQDGSVPIVKGGATGQCDGFADEESDAGTTRGEKYINLEVGKCKEPTLEAWVEPVVGRSSLKRPKYKKSKSGNYKSFGSSVICINGGPGVGKTELALEFAYRYSQRYKMVLWVGGEARYFRQSILNLSLNLGLDVSADAEKERGRIRSFEEQEFEAFKRVKRELFRDMPYLLIIDNLETEKEWWEGKDLHDLIPRNTGGSHVIVTTRLSKKQSFSNESSGILLLCFTTNKWEKEPPCL* 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10527534 10529868 + Vvi19g788 Vvi19g788 782287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g788 551 Pfam NB-ARC domain 389 522 IPR002182 GO:0043531
Vvi19g788 551 PANTHER DNA REPAIR PROTEIN RADA 323 527 - -
Vvi19g788 551 PANTHER DNA REPAIR PROTEIN RADA 25 122 - -
Vvi19g788 551 PANTHER DNA REPAIR PROTEIN RADA 124 317 - -
Vvi19g788 551 Gene3D - 357 529 IPR027417 -
Vvi19g788 551 SUPERFAMILY Toll/Interleukin receptor TIR domain 157 259 IPR035897 -
Vvi19g788 551 Gene3D - 139 278 IPR035897 -
Vvi19g788 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 523 IPR027417 -
Vvi19g788 551 ProSiteProfiles TIR domain profile. 156 280 IPR000157 GO:0007165
Vvi19g788 551 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 25 122 - -
Vvi19g788 551 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 124 317 - -
Vvi19g788 551 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 323 527 - -
Vvi19g788 551 SMART AAA_5 391 549 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g788 - - - vvi:100246258 1009.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1274 Cone15ag1300 . . . Cme06g02708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012625 0 1 0 0 0 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 2 29