Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g79 ATGACGTCGGGGGCGAGGCTGCCGACATGGAAGGAGAGGGAGAACAACAAGAGGAGAGAGCGGCGGAGGAGGGCCATCGCGGCGAAGATTTTCGCCGGACTGAGAATGTACGGAAACTACAAGCTCCCCAAGCACTGCGACAACAACGAAGTCCTCAAAGCCCTTTGCAACGAGGCCGGATGGACCGTCGAGCCCGACGGCACCACCTACCGGAAGGGATGCAAGCCTGTTGAACGCATGGACATTGTGGGTGGATCCGCATCAGCAAGCCCGTGCTCATCTTATCACCCAAGCCCTTCTTCCCCATCTATACATCCATAG 321 57.94 MTSGARLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPVERMDIVGGSASASPCSSYHPSPSSPSIHP* 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 897657 902185 - Vvi19g79 Vvi19g79 781578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g79 106 MobiDBLite consensus disorder prediction 85 106 - -
Vvi19g79 106 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 100 - -
Vvi19g79 106 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 102 IPR008540 -
Vvi19g79 106 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 100 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vvi19g79 106 MobiDBLite consensus disorder prediction 1 21 - -
Vvi19g79 106 MobiDBLite consensus disorder prediction 87 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g79 - - - vvi:100241756 154.836
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g920 . 52 202 BZR Transcription Factor Family AT1G75080 56.5 3.7e-46 182.6
Vvi4g920 . 35 202 BZR Transcription Factor Family AT1G19350 52.3 1.2e-44 177.6
Vvi19g79 . 1 97 BZR Transcription Factor Family AT1G78700 87.8 2.7e-46 183.0
Vvi18g898 . 29 165 BZR Transcription Factor Family AT4G36780 62.5 5.5e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14444 PF05687 BES1_N 2.00E-57 No_clan Vvi TF