Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g790 ATGTTATCCGTTGAAAACCCTCCACCAGATCCCCCATGTCCTTGCGAAATTTCCCAACTGAAAGGTAGTGATGAGAGGGCTTCTGATAAACTTGCCTTGCCAGAGGTAGATCTGTTCAACTCAGGCCTTGATGATACCCAGCTACCCAAATTCTCCATAAGAGATTATGTTTTTGGTACCCGGGGCAAGGATATCAAGAAGAATTGGCCTTTTTCTCAGAAAAATTTGCAACTTTGCTTGAAGCATGGCGTGAAGGATGTGTTGCCACCATTTCAGTCTCTTGATTCAGTAAGGGAGGGGTCCTTCAAAGGATGTGTGGCCGAGACTTACTGCATAGACATAAATTCATCTGGATCTGGAGGAGAAAAAGATTTTCCTTCATCCACAACCAGAGATCTCGCACCCCATAAGACTGAGAGCAAGACTCAACCCTCTGCTAAGAAGTGCAGGTTGATAGTGAAATTGCGGGCGGTCTCTGATCCTAGCTCAACCGAAGATATTGCATCAAATTGTACAACCCTCTCAGAAGCAATGGCTTCTAAAATATGCCCTGTTTGCAAAACCTTCTCATCCTCTTCTAACACCACATTGAATGCTCATATAGATCAGTGCCTTTCTGTGGAATCAACCTCCAGGTGGATGGAGGATTCTAGACAGACCAGACATAGAATAAAGCCAAGGAAAACAAGATTGATGGTGGACATCTGCGCAACAGCACCACGGTGCACGCTTGAGGAGCTTGACAGAAGAAATGGTTCAAACTGGGCCACGGATTTGAGCTTACCTACTCAAAATACTGAGGGGTGTGCCCATGAGAAAAGACAAAGACTTTCACCTGTTCATCCTGAGGAGACTGGCGATGAAGGTGCAGTCTATATTGATGCAAGTGGCACAAAAGTTCGAATTTTGTCAAAGCTTAACGTTCCATCATCTGTCTCAAAAGTAGGAGAGGATCCCCGGACAAGCAAACCATTAAGAGGAAGTAAAGGAAGCAAATTCTTCTCAACCAACAAGAGAAAGCGGCATGTGAACAAATATCATAACTACCTGAAAGTTGCTATTCAGAGCAAAAAAGATTGTTCTCCCAAGGCTCATAATTCTGAGATTCATGGGACTCGGGAAGAAAACTGTGGGGCAGAAGTTCATGAGGAGGAGGAACATCGGGCACATAATTTTAAAGCTCAAGAGCAGATCAAACCCAGTGATTCAGGAACTTTGAGACAGTGGGTATGCTCCAAGCGAACTGGTCTCTCAAAGAAGGTTAATGGTAAAGATGGCCATCAGCGGCCGGCATATAAGTTGCGTACAACACAAGACTTGGCAATTGAGAGTGATCAGTCATGTTTGGGTGATTCTTATGTGGAGAAAAATACTCGAAGATCTCCAAACTTGATGGAGAATGTTATTTCCTCTGAAAGCAAGAAGAAAGTGGAGAATTCTTTGAATGAATCCCGAGGCTATGATGATGGGGAGCAGTCTCCTGGAAGAAAGAGATTGGGAAGTTCCTTGTTTAGAGCCAGAATTAGTGACAATGTGGAGAGGTTTCAGGAACCACTGAAGCAAAATGCAAATCAATTAAGCAAAGAAAATACTTCTGTTTGTGATAGAATTATGCTTAAACGAACAAACACCATAGGAAATCATGTATCTCCACTCAGCAATAAGACATCTGACATTCTTGCAGGTCCTGTCAGAAGCCCTGATAGTTCTACCAGTGCAAACCCAAAACCATACCGGAGTAAATCATTGTCATCAAAAGCCATGAAATCCTCCACTTTGAGGAAGGATGTTTTGTCAGTTCATCAATCATTTTTAAACAAGAAATATTCAGCCTTAAAGAAGCCTTGGGTGCTGCATTCTGAAGCAGAAATAGATGAGGAGTCACCTTCTGAAGGGGATCAACATTATGATATGATGCATGATCATGTTGAAAATCAATCTGGAGTAGAAGAGATTAATGACAGTGTGTGTCTTGATAGAAGCAGTGTGCTGGAAATCAGGCAAGAAAGAGGGGCTATGGGTGTGTCCCAGGGGGAGGATGCCATGGTTTTGAAGAGGTCACAAGCATCTTGGAGTCATGGCCATGATGTAGGGGAAAATATAGATTCTTCTTCTAAAATTGGGCAAGGGAACTCCTTTCCTGAGGTTGATCCAATACCTATTCCAGGACCCCCAGGTTCATTTTTGCCAAGTCCTAGGGATATGGGCTCTGAAGATTTTCAAGGGCACTCATCATTAACAACAAGCCTGGTTCAATCATCCTCCCAAGATCAACATGATTTGGTTGATGGCGATTCATCTGATTCTCCTATTTCTGCAACATCAACCATCTCAAACTCCACTGTAGCAAGACCTGATTTAAAATTGACCTCTTCCATAAAGGGACCTCTCAGTTTCCAAGATGATGATCAGCCATGCTGTTGCTCACGGAAGGAGAGGACCTCTCAAGGTGTTGCTTTAAATTATCAAGAATCACAGCTTCTAAGGCGAAGGACTATGGCTTCAGTAATTGACTGTGATTCTGCCAGTCCATCTGGTTCTAATCCGATTCTCAGGCTGATGGGAAAAAATTTGATGGTAGTCAACAAAGATGAAGTTGCACCTATGCAGCTCGGAGAAACCCAACCAGTTCCACTGAGTAACTGTCCGAATCCACAGTTTCTGAACTTTTCTGGAGTCTCTCATGGCAATGCTCAAAATCCTGACTACCATTACTTTCATCATATGATCCCTCCAGGGTTTGTGAGGCTTTTGTCATTGTTGTTTTTATGTTGTCAAGGGGTTTGTTGA 2790 43.15 MLSVENPPPDPPCPCEISQLKGSDERASDKLALPEVDLFNSGLDDTQLPKFSIRDYVFGTRGKDIKKNWPFSQKNLQLCLKHGVKDVLPPFQSLDSVREGSFKGCVAETYCIDINSSGSGGEKDFPSSTTRDLAPHKTESKTQPSAKKCRLIVKLRAVSDPSSTEDIASNCTTLSEAMASKICPVCKTFSSSSNTTLNAHIDQCLSVESTSRWMEDSRQTRHRIKPRKTRLMVDICATAPRCTLEELDRRNGSNWATDLSLPTQNTEGCAHEKRQRLSPVHPEETGDEGAVYIDASGTKVRILSKLNVPSSVSKVGEDPRTSKPLRGSKGSKFFSTNKRKRHVNKYHNYLKVAIQSKKDCSPKAHNSEIHGTREENCGAEVHEEEEHRAHNFKAQEQIKPSDSGTLRQWVCSKRTGLSKKVNGKDGHQRPAYKLRTTQDLAIESDQSCLGDSYVEKNTRRSPNLMENVISSESKKKVENSLNESRGYDDGEQSPGRKRLGSSLFRARISDNVERFQEPLKQNANQLSKENTSVCDRIMLKRTNTIGNHVSPLSNKTSDILAGPVRSPDSSTSANPKPYRSKSLSSKAMKSSTLRKDVLSVHQSFLNKKYSALKKPWVLHSEAEIDEESPSEGDQHYDMMHDHVENQSGVEEINDSVCLDRSSVLEIRQERGAMGVSQGEDAMVLKRSQASWSHGHDVGENIDSSSKIGQGNSFPEVDPIPIPGPPGSFLPSPRDMGSEDFQGHSSLTTSLVQSSSQDQHDLVDGDSSDSPISATSTISNSTVARPDLKLTSSIKGPLSFQDDDQPCCCSRKERTSQGVALNYQESQLLRRRTMASVIDCDSASPSGSNPILRLMGKNLMVVNKDEVAPMQLGETQPVPLSNCPNPQFLNFSGVSHGNAQNPDYHYFHHMIPPGFVRLLSLLFLCCQGVC* 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10531059 10542440 - Vvi19g790 Vvi19g790 782289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g790 929 MobiDBLite consensus disorder prediction 311 333 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 255 287 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 471 495 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 546 592 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 118 143 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 738 778 - -
Vvi19g790 929 Gene3D Classic Zinc Finger 182 207 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 459 501 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 360 407 - -
Vvi19g790 929 PANTHER HAPLESS PROTEIN 836 913 - -
Vvi19g790 929 PANTHER HAPLESS PROTEIN 1 705 - -
Vvi19g790 929 PANTHER HAPLESS PROTEIN 693 835 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 690 778 - -
Vvi19g790 929 PANTHER HAPLESS PROTEIN 693 835 - -
Vvi19g790 929 PANTHER HAPLESS PROTEIN 836 913 - -
Vvi19g790 929 PANTHER HAPLESS PROTEIN 1 705 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 269 283 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 361 395 - -
Vvi19g790 929 MobiDBLite consensus disorder prediction 693 711 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g790 - - - vvi:100263414 1350.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g790 . Blo03g01495 . . . Bpe08g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1275 Cone15ag1301 . . . . . . . . . . . . . . . . Cma16g00997 . Car16g00954 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006752 0 2 1 1 1 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 38