Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g793 ATGTCGGGAGGGGAATTGAGCGATCAGAGTCATCTCCTGAGATCGAACGGAGAAGGGGACGTGGAAGTTGGAGGAGGAGGAGGGGGCAACAGCAAGAGTAAAGGCATTAAGGATCTACTGAAGCATCACCTGGATCGAGGATTCTCCGGACGCCGTCTCAGCTTCAAGCGATTGGAGAGTAATAGGGAGAGAGACCTCCACAACCATCACCATTCCTCTTTTGATCACGCCGACCTCGGCGATGCCCTCGGCGACAGCGCCCCTCCCGAATGGGCTTTGCTCCTTATTGGCTGTCTTCTCGGCCTCGCCACCGGTCTTTGTGTTGCAGCCTTCAATCGTGGGGTGCATGTAATACATGAATGGGCTTGGGCTGGAACTCCAAATGAGGGTGCTGCTTGGCTCCGGTTACAAAGACTAGCTGATACTTGGCATCGGATACTTTTAATACCTGTCACAGGAGGAGTTGTTGTTGGCATGATGCATGGTTTACTTGAAATATTAGACCAAATAAAGCAGTCCAGTTCTTCTCAAAGGCAAGGTTTTGATTTGCTTGCTGCTGTCTCCCCAACAATCAAGGCCATCCAAGCTGCTGTGACCTTAGGCACTGGTTGTTCCTTGGGTCCTGAAGGCCCTAGTGTAGATATTGGTAAATCATGTGCAAATGGATTCTCAGTAATGATGGAAAACAATAGAGAACGAAAGATAGCTCTCGTTGCCGCCGGGGCCGCAGCTGGCATTGCTTCAGGTTTTAACGCAGCTGTTGCTGGTTGTTTCTTTGCCATTGAAACGGTGTTAAGGCCTCTTCGTGCAGAAAACTCACCTCCTTTCACAACTGCAATGATAATATTGGCCTCTGTTATTTCATCTACTGTGTCCAATGTTTTACTTGGGGAGAAACCAGCTTTTACAGTGCCTGTGTATGAACTGAAATCTGCAGCTGAATTACCTTTGTACCTGATATTAGGTATGCTATGTGGGGTTGTTAGTGTAGCATTCACCCGCTTGGTCGCATGGTACTCTAAATCATTTGAACTTATCAAAGAAAAATTTGGCCTTCCTGCTGTTGTATGCCCTGCTCTAGGTGGCTTGGGAGCTGGGATAATAGCTCTTAAGTATCCTGGAATACTTTACTGGGGTTTCACAAATGTTGAAGAAATTCTACATACTGGGAAGAGTGCTTCAGCACCTGGAATCGGACTATTAGCTCAACTAGCAGCAGCCAAAGTTGTGGCAACAGCTCTGTGCAAGGGATCTGGGCTTGTAGGTGGCCTCTACGCTCCGAGTTTGATGATTGGTGCTGCTGTTGGTGCGGTCTTTGGGGGTTCAGCAGCAGAACTTATCAATTCAGCTATTCCGGGAAATGCTGCTGTTGCGCAGCCACAGGCATATGCATTGGTTGGGATGGCTGCTACATTAGCTTCAGTTTGTTCTGTACCCTTGACATCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATATTGCTTCCTCTCATGGGAGCTGTTGGATTAGCAATTTGGGTTCCTTCTGTGGCAAACCAGGCCAAGGAGACTGAAGCATCTGATACAAGGAGTCCATCAAGAGGTTATTCCTTTGTTACGCCTGTTGAAGATAAAAATGAGGGCATTTGGAGACAAACTGGTGATGGAGATAGTCTAGAACTCTCTGTTATAGGAAATTCCTCTGACAATGAAGCAATTAATGATGATGTACTTCTGGAAGATTTGAAGGTTTCCCAAGCCATGTCAAAGAACTTTGTGAAGGTTTCATCAACCATGACCTTGAAAGAAGCAACAAAATGTATGCATGACCGGCAGCAGAATTGTGTGCTTGTGGTTGATGCTGAAGATTTTCTGGAGGGAATCCTAACTTATGGTGACATTAAACGTTATCTGTCCAAGAAGTCCAAGGAGGCTCCTAAGGGTGATTCATCACTTCCTGATGTAAATGCAAGTCTTGTTTCCTCTGTGTGTACTCGAGGGATGAGCTACCGTGGGCGAGCCCGTGGACTTTTAACTTGTTATCCAGACACTGACTTAGCAAGTGCAAAGGAGCTAATGGAAGCTAAGGGAATCAAGCAGTTGCCAGTGGTTAAGCGTGGTGGTGAACCAAAAAAAGAAAGAAAGCGCAGCATTGTTGCTATTCTTCATTATGATTCAATATGGAACTTTCTCAGAGAGGTGATGAATGGCAGAATACCAGTCTATCAGCAGAGGAAAGAAGAGAATATTGGTGGTTAA 2244 46.08 MSGGELSDQSHLLRSNGEGDVEVGGGGGGNSKSKGIKDLLKHHLDRGFSGRRLSFKRLESNRERDLHNHHHSSFDHADLGDALGDSAPPEWALLLIGCLLGLATGLCVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVVVGMMHGLLEILDQIKQSSSSQRQGFDLLAAVSPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSVMMENNRERKIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGEKPAFTVPVYELKSAAELPLYLILGMLCGVVSVAFTRLVAWYSKSFELIKEKFGLPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIGLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAELINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQAKETEASDTRSPSRGYSFVTPVEDKNEGIWRQTGDGDSLELSVIGNSSDNEAINDDVLLEDLKVSQAMSKNFVKVSSTMTLKEATKCMHDRQQNCVLVVDAEDFLEGILTYGDIKRYLSKKSKEAPKGDSSLPDVNASLVSSVCTRGMSYRGRARGLLTCYPDTDLASAKELMEAKGIKQLPVVKRGGEPKKERKRSIVAILHYDSIWNFLREVMNGRIPVYQQRKEENIGG* 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10605054 10620089 + Vvi19g793 Vvi19g793 782292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g793 747 MobiDBLite consensus disorder prediction 1 35 - -
Vvi19g793 747 CDD CBS_pair_voltage-gated_CLC_euk_bac 583 723 - -
Vvi19g793 747 Gene3D - 564 726 IPR046342 -
Vvi19g793 747 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 30 743 - -
Vvi19g793 747 SMART cbs_1 586 634 IPR000644 -
Vvi19g793 747 SMART cbs_1 671 727 IPR000644 -
Vvi19g793 747 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 30 743 - -
Vvi19g793 747 SUPERFAMILY CBS-domain pair 573 704 IPR046342 -
Vvi19g793 747 Gene3D Clc chloride channel 81 525 - -
Vvi19g793 747 Pfam CBS domain 671 704 IPR000644 -
Vvi19g793 747 Pfam CBS domain 579 634 IPR000644 -
Vvi19g793 747 CDD Voltage_gated_ClC 103 506 - -
Vvi19g793 747 Pfam Voltage gated chloride channel 170 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g793 747 ProSiteProfiles CBS domain profile. 583 639 IPR000644 -
Vvi19g793 747 SUPERFAMILY Clc chloride channel 89 512 IPR014743 -
Vvi19g793 747 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g793 747 PRINTS Chloride channel signature 243 262 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g793 747 PRINTS Chloride channel signature 420 440 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g793 747 PRINTS Chloride channel signature 461 477 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g793 747 PRINTS Chloride channel signature 479 498 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g793 - - - vri:117909032 1377.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43