Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g794 ATGGCGGGTATTGATGACCATGTTGCTATAATTGGAGATTGGGTGCCTCCCAGTCCAAGCCCGAGAATGTTCTTCTCAATGATGCTAGGTGATGATGTTGACTCAAGAGCAACCTCTGAACCTACCAACGAAAATAGAAATGAGGCTGGTGACTTGGGTGATCAATTGACTGAATTCGGTGCATTTTCTGATCAGAAATTAAGCTCACGGGGAGGTCTTGTGGAAAGGATAGCAGCCAGAGCTGGATTTAATGCTCCAAGGTTGAATACAGAAAGTATCAGATCTGCTGACCTGTCATTGAACCCTGATGTTCGGTCTCCTTACCTGACAATCCCTCCTGGTCTCAGTCCAACTACACTGCTAGAATCTCCAGTTTTTCTCTCGACTTCACATGCTCAACCCTCTCCAACAACGGGAAAATTCCCATTTATTCCAAATGTTAACAATAGGAGCTCCATGTTGATCCCAGCGGCCCCTGATAGGAGTAAAGAAGATCTGTTTGAGGACTTCAATACCTCATCTTTTGCATTCAAGCCTGTTGCAGAATCGGGTTCCTCCTTTTTTAATAATGGAGCCAGCAAAATATCTGCTGCGACCATTCCACAGCAATCATTTCCTAGTATTGAGGTCTCAGTTCAGTCAGAGAACTCTCTACCTTCTCAAATTATGGAACCTACCAAAGTCCACTCTCAGATTGGCAGTGCTGAACATTCTCCACCACTTGATGAGCAACAAGATGAGGATGGAGATCAAAGGGGTGGTGTAGACAACATGGTTGGTGGTGCCCCAGCCGAGGATGGATATAATTGGAGAAAATATGGACAGAAGCAAGTAAAAGGCAGCGAATTTCCACGAAGTTATTACAAGTGCACGCATCCAAATTGTCAAGTTAAGAAGAAGGTGGAACGGTCTCATGAAGGCCACATAACAGAGATCATCTACAAGGGAGCCCACAATCACTCCAAACCTCCACCCAATCGCCGATCAGCCATTGGGTCATCTAATCCACTCAGTGACATGCAGCTAGATATACCAGAACAGGCAGGGCCACATGGTGGTGATGGTGATCCAGGTCAGAATGGTGCTCCTTTTGAATCAAGTGATGCAGTGGATGCCTCATCCACCTTTTCTAATGATGAAGATGATGATGATCGAGTGACACATGGCAGTGTATCATTGGGTTATGATGGTGAAGGAGATGAATCTGAATCAAAGAGAAGGAAAGTCGAAGCTTATGCAACAGAAATGAGTGGAGCCACCAGAGCAATTCGTGAGCCTAGAGTTGTGGTTCAGACAACCAGTGAGGTGGATATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAGAAAGTCGTGAAAGGAAATCCGAATCCAAGGAGTTACTACAAGTGCACCAATGCAGGCTGCACAGTAAGGAAGCATGTGGAGAGGGCATCACATGACCTTAAGTCAGTTATAACCACATATGAAGGGAAGCACAATCATGATGTTCCTGCTGCTCGCAATAGCAGCCATGTCAACTCTGTTCATAACATGGCGAGGTTTGACAGGCCTCCTTCATTTGGTACATTCAACCTGCCTGGAAGGCAGCAGCTGGGGCCTTCCCATGGTTTCTCTTTCGGGATGAATCAACCAGGCCTGGCCAATCTTGGAATGGCTGGCTTGGGCCCTACCCAAGGCAAGCTGCCTGCTCTGCCGGTTCATCCATATCTGGGACAGCAACGCCAGGTGAATGAAATGGGTTTCATGTTGCCAAAAGGAGAACCAAAGGTGGAGCCCATGTCAGAACCCAGTCTAAACCTCTCCAGCGGCTCTGCTGTTTATCATCAAATTATGAGCAGGCTACCGCTTGGACCTCAGATGTAA 1869 46.87 MAGIDDHVAIIGDWVPPSPSPRMFFSMMLGDDVDSRATSEPTNENRNEAGDLGDQLTEFGAFSDQKLSSRGGLVERIAARAGFNAPRLNTESIRSADLSLNPDVRSPYLTIPPGLSPTTLLESPVFLSTSHAQPSPTTGKFPFIPNVNNRSSMLIPAAPDRSKEDLFEDFNTSSFAFKPVAESGSSFFNNGASKISAATIPQQSFPSIEVSVQSENSLPSQIMEPTKVHSQIGSAEHSPPLDEQQDEDGDQRGGVDNMVGGAPAEDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHSKPPPNRRSAIGSSNPLSDMQLDIPEQAGPHGGDGDPGQNGAPFESSDAVDASSTFSNDEDDDDRVTHGSVSLGYDGEGDESESKRRKVEAYATEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVNSVHNMARFDRPPSFGTFNLPGRQQLGPSHGFSFGMNQPGLANLGMAGLGPTQGKLPALPVHPYLGQQRQVNEMGFMLPKGEPKVEPMSEPSLNLSSGSAVYHQIMSRLPLGPQM* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10665035 10669055 - Vvi19g794 Vvi19g794 782293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g794 622 ProSiteProfiles WRKY domain profile. 434 499 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 ProSiteProfiles WRKY domain profile. 265 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 MobiDBLite consensus disorder prediction 33 52 - -
Vvi19g794 622 MobiDBLite consensus disorder prediction 313 408 - -
Vvi19g794 622 SUPERFAMILY WRKY DNA-binding domain 431 499 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 Gene3D WRKY domain 254 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 MobiDBLite consensus disorder prediction 226 271 - -
Vvi19g794 622 Gene3D WRKY domain 426 492 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 SMART WRKY_cls 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 SMART WRKY_cls 439 498 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 559 IPR044810 GO:0003700
Vvi19g794 622 Pfam WRKY DNA -binding domain 440 496 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 Pfam WRKY DNA -binding domain 265 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 84 559 - -
Vvi19g794 622 SUPERFAMILY WRKY DNA-binding domain 261 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g794 622 MobiDBLite consensus disorder prediction 326 341 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14445 PF03106 WRKY 3.00E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g794 K18835 - vvi:100261730 1189.48