Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g797 ATGGTGGGTGTTGGCTTGGAGGGCCTCCCAACCACCCTCATTAACGAAATAATAGTGAAGCTGGACACGGAGACACTCTGCTCTGTAGCTTGCGTCTCCCGAGCTCTTCGCTTCGCCGTCTCTGAAGCTCTTCCTCTTTCTTCTTCTCTTGATCTCTCTGCATTTTCCCCAGATGCCCAGACCCTGAATCACCTTGTTTCCCGGTGCAAAGGCCTCAAGATTCTCACCCTTGATTGCCTCCGCCTGGATGATTCTTCCATCACCATTTTTCTTGGTCCACATATCCAGGAATTGAATTTGTTGAGATGTTCCTTGCTGTCATATCAACTTCTTCGTTCCATTGGCGAAAGCTTGCCCAATTTAAGGTTGCTCACACTAGAACTGTCATACTGGGACTTGCCTGAAGTGTTCAACAGGAATCTTGTACAAATGCTTACGGGTTGCTCTTACTTGGAGTCTCTATGTCTAAAGATTCGAGGGGCAGAATTTGATGCCACTTTTTTCCGGTCCATTCAACATTTCCTGCCCAAAACTGTTAAAATCTTGAAGTTGCAGCCAGTGCTTGAACAAGATGTGATTCGTTTTATACATGAGCTCAGAGTTAACCGGAATATTTTGGATACAGCTGAATTTGGAATTCCCTTCTCTCCAGCATCCCCTGGTTTCAAATTGCAGTCCTTATCTCTTGTCTTAGATATCATATCCGATGAACTTATTAGTTCCATCACCGACTCTCTTCCGTTTCTGATTGAGCTTCATCTTGAAGATAGACCAAGCAAAGAACCATCACCATTCCATGATTTGACTAACAGTGGGCTTCAGTCTTTGAGGTTTTGTCGTCATTTAACTGACATCTCTCTTATACGAAGTAGACACAACCTCCCAGTATATTTCAAAAGGATAAATGATATGGGCATGTTTCTCCTTTCTGAGGGCTGCAGGCTCCTAGAGTCGGTGAGACTTGGTGGGTTTTGTAGAGTTAGTGATGCTGGTTTTGCATCAATTCTGCACTCTTGTTGGCACCTAAAAAAATTTGAAGTTCGTAATGCCTTACTTCTGTCTGATCTGGCCTTCCATGATCTCACTGGAGCCCCCTGTTCCCTGGTTGAGGTGAAATTGTCATCCTGTAATCTTATAACTAGTGAAACCGTTCATAAAATGGCCTCTTCCAGAAGGTTGGAGGTGCTTGACCTCTTTGGCTGCAAGAGCATAGCTGACTCATCTCTCAGCTCCATTACATGTCTTAATAAACTAACTACATTGAATCTTGGAGGTGCTGATGTTACAGACAGAGGTTTATCTGTTCTCAGTCAGGGGTATTCACCCATTTCACATTTGTGCCTTCGAGGCTGTAAGAGGGTAACTGACAAAGGGGTTTCTCTTTTGTTTCATGGCTGTGGAGTGATTAGTAAAACATTGACAGCACTGGATTTAGGCCACATGCCAGGGATATCAGATAAAGCCATTCTCACAATTGCTGCAGTTGGTACAGGGATTACTGAATTGTGCATTAGGTATTGTTTCTATGTGACTGATTCTTCAGTGGAAGCATTGGCCACAAAAAGAAGGCTTCAGGATGGAAGGAAACCACTTCGGAAGCTAGATCTCTTTCACTGCACTGGGTTGTCTGTTAAATCATTAGAGTCATTGAAGAGGCCTTTCTTTCAAGCTCTAAAGTGGATTGGTCTTGGACGCACTTGTTTGAGTGGTAAAGCAAATGAAATCTTGAATGAACGCCCCTGGCTGACTCTCTGTTTGGATGGCTGTGAAATGGGATGTCATGATGGGTGGCACTTCCATAGACCAGAGACCAGAGACCATTAA 1824 43.97 MVGVGLEGLPTTLINEIIVKLDTETLCSVACVSRALRFAVSEALPLSSSLDLSAFSPDAQTLNHLVSRCKGLKILTLDCLRLDDSSITIFLGPHIQELNLLRCSLLSYQLLRSIGESLPNLRLLTLELSYWDLPEVFNRNLVQMLTGCSYLESLCLKIRGAEFDATFFRSIQHFLPKTVKILKLQPVLEQDVIRFIHELRVNRNILDTAEFGIPFSPASPGFKLQSLSLVLDIISDELISSITDSLPFLIELHLEDRPSKEPSPFHDLTNSGLQSLRFCRHLTDISLIRSRHNLPVYFKRINDMGMFLLSEGCRLLESVRLGGFCRVSDAGFASILHSCWHLKKFEVRNALLLSDLAFHDLTGAPCSLVEVKLSSCNLITSETVHKMASSRRLEVLDLFGCKSIADSSLSSITCLNKLTTLNLGGADVTDRGLSVLSQGYSPISHLCLRGCKRVTDKGVSLLFHGCGVISKTLTALDLGHMPGISDKAILTIAAVGTGITELCIRYCFYVTDSSVEALATKRRLQDGRKPLRKLDLFHCTGLSVKSLESLKRPFFQALKWIGLGRTCLSGKANEILNERPWLTLCLDGCEMGCHDGWHFHRPETRDH* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10694907 10702975 + Vvi19g797 Vvi19g797 782296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g797 607 Pfam Leucine Rich repeat 416 437 IPR001611 GO:0005515
Vvi19g797 607 Pfam Leucine Rich repeat 390 412 IPR001611 GO:0005515
Vvi19g797 607 SMART LRR_CC_2 366 390 IPR006553 -
Vvi19g797 607 SMART LRR_CC_2 415 439 IPR006553 -
Vvi19g797 607 SMART LRR_CC_2 313 338 IPR006553 -
Vvi19g797 607 SMART LRR_CC_2 496 521 IPR006553 -
Vvi19g797 607 SMART LRR_CC_2 92 117 IPR006553 -
Vvi19g797 607 SMART LRR_CC_2 440 465 IPR006553 -
Vvi19g797 607 SMART LRR_CC_2 528 553 IPR006553 -
Vvi19g797 607 SMART LRR_CC_2 470 495 IPR006553 -
Vvi19g797 607 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 9 566 - -
Vvi19g797 607 SUPERFAMILY F-box domain 6 42 IPR036047 GO:0005515
Vvi19g797 607 Gene3D Ribonuclease Inhibitor 35 389 IPR032675 -
Vvi19g797 607 Gene3D Ribonuclease Inhibitor 390 585 IPR032675 -
Vvi19g797 607 SUPERFAMILY RNI-like 301 566 - -
Vvi19g797 607 PANTHER UNCHARACTERIZED 9 566 - -
Vvi19g797 607 SUPERFAMILY RNI-like 48 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g797 - - - vvi:100244592 1171.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24