Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g798 ATGTTCGTCAACGGTGCCAGCACCGTCGCCTCTTTATTCACACAGCAGGGCAAGAAGGGTACCAATCAGGACGCCATGCTTGTTTGGGAGAATTTCAGTTCAAGAAGTGATACAATCTTCTGTGGAGTATTTGATGGTCATGGTCCTTATGGTCATATGGTTGCAAAGAAAGTGCGGGACTGTCTTCCTTTGATTCTACACACTCAGTGGCAAGCTAACTCAAATAGTGATAAAAAAAGTGATGGTAAGAATGGAAATGCTCCTGAGAAGACAAATTTGGAAGAAACTGCATCTTTGAACATGGATGATGAATATTATGAGTCATTGGAGGTTGATGACAATGAAAAAGTCCCTGAGATGTATCTTCCACTCAAAGAGTCCTTTTTAAAGGCTTTCAAGCTAATGGACAAGGAATTGAAGTTGCATCCAACAATCGATTGTTTCTGCAGTGGAACTACTGCTGTAACTTTGGTAAAGCAGGGACCAAATCTTGTAATTGGAAATATTGGTGATTCAAGAGCAGTACTGGCAACAAGAGACGTAGAGAACTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGGATGAGCCAGAGGTTGCACGAGTATGGTTGCCTAATAGTGACTCACCTGGTTTGGCAATGGCTAGAGCTTTTGGGGACTTCTGTTTGAAGGATTTTGGTTTAATTTCTGTGCCAGATATTTATTATCGCCATCTCACTGAGAGGGATGAGTTCATTATTCTTGCCACTGATGGGGTTTGGGATGTTCTCTCAAATAAGGAAGCTGTTGATATCGTAGCTTCAGCCCCTGGTCACACAACAGCAGCCAGAGCTCTGGTAGACTGTGCTGTTCGAGCATGGAGGCTCAAATACCCTACATCCAAAAATGATGATTGTGCTGTAGTGTGCCTCTTCCTGGAACATGCATCTGCTGTTGATGAGACTCCCACAGAGAATGGTTTGACGAAGACTCCAGAAGCAGTAGCAGATGGGATGATACATTCCAGTACTGCAGAAGGCTGTAATGAGATCATGCCTCTTTCTGAGTCAACTGAGGAAAAGTTATCTGACAAGTGCCGAGGCCAGTCTAAGAGGAGCCTAGCTGAGTGCATTTCAACTGCAGAGGATGAGGAGTGGTCAGCATTAGAGGGTGTTACCAGGGTGAATAGTCTGCTTAGCCTTCCCAGATTTTTATCTAGTGATAAAAGTGCGGCCAACTGGAGAAAATGGTTATGA 1302 44.16 MFVNGASTVASLFTQQGKKGTNQDAMLVWENFSSRSDTIFCGVFDGHGPYGHMVAKKVRDCLPLILHTQWQANSNSDKKSDGKNGNAPEKTNLEETASLNMDDEYYESLEVDDNEKVPEMYLPLKESFLKAFKLMDKELKLHPTIDCFCSGTTAVTLVKQGPNLVIGNIGDSRAVLATRDVENSLTAVQLTIDLKPNLPREAARIHQCKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPDIYYRHLTERDEFIILATDGVWDVLSNKEAVDIVASAPGHTTAARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEHASAVDETPTENGLTKTPEAVADGMIHSSTAEGCNEIMPLSESTEEKLSDKCRGQSKRSLAECISTAEDEEWSALEGVTRVNSLLSLPRFLSSDKSAANWRKWL* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10712858 10726195 + Vvi19g798 Vvi19g798 782297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g798 433 MobiDBLite consensus disorder prediction 73 97 - -
Vvi19g798 433 Pfam Protein phosphatase 2C 24 306 IPR001932 -
Vvi19g798 433 CDD PP2Cc 9 328 IPR001932 -
Vvi19g798 433 Gene3D - 5 337 IPR036457 -
Vvi19g798 433 ProSiteProfiles PPM-type phosphatase domain profile. 9 328 IPR001932 -
Vvi19g798 433 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 4 417 - -
Vvi19g798 433 SMART PP2C_4 1 326 IPR001932 -
Vvi19g798 433 SUPERFAMILY PP2C-like 8 329 IPR036457 -
Vvi19g798 433 MobiDBLite consensus disorder prediction 73 95 - -
Vvi19g798 433 PANTHER ALPHABET, ISOFORM E-RELATED 4 417 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g798 - - vvi:100266911 866.3