Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g80 ATGGGAGGGATTGGCAAAACAACTGTCGTTACTCATATTCACAATCGGCTCTTGGAAAATAGGGACACTTTCGGCCATGTCTATTGGGTGACTGTATCAAAAGACTCCAGCATTCGTAGGTTGCAGGATGCTATTGCTGGAAAAATAAATTTAGATTTCTCAAAAGAGGAAGATGAAAAGATAAGAGCTGCTTTATTATCAGAAGCATTGCAGAAGAAAAAGAAATTTGTTCTTGTATTAGATGATGTATGGGAAGTTTATGTCCCACGGGAGGTTGGAATTCCAATTGGAGTTGATGGAGGAAAACTAATCATAACCACCAGATCAAGGGATGTGTGCCTAAGAATGGGATGCAAAGAAATTATCAAAATGGAACCACTTTCTAAGGTAGAAGCATGGGAGCTTTTCAACAAAACACTTGAGCGGTACAATGCACTGAGTCAAAAAGAAGAAGAAATAGCCAAGGATATTATCAAGGAATGTGGCGGTTTGCCTCTTGCCATTGTCACTACAGCTAGAAGTATGAAATGTTTATTATACTGTGCATTGTTTCCTGAAGATTATAAGATTAGGAGAGTGTCTTTGATCGGATACTGGATTGCTGAGGGGTTGGTAGAAGAAATGGGAAGTTGGCAAGCAGAGCGTGATAGAGGGCATGCTATATTGGACAAACTTGAAAATGTGTGTTTGTTGGAAAGATGTGAGAATGGAAAATATGTAAAGATGCATGATGTGATCAGGGACATGGCTATCAACATATCAACAAAGAATTCTCGATTCATGGTGAAAATCGTAAGAAATCTAGAAGATCTCCCAAGCGAGATAGAGTGGTCAAATAATAGTGTAGAAAGAGTTTCATTAATGCAAATTCGCAAGCTTTCAACTTTGATGTTCGTACCAAACTGGCCTAAGCTTTCCACCCTGTTTCTTCAAAATAACATGTATTCTTATCCATTTCGGCCTACTCTGGATAAAGGTCTTCCAAATTCCTTCTTTGTGCACATGCTGGGCCTTAGAGTTCTAGACCTGTCATACACAAACATTGCATTCCTACCAGATTCTATTTATGACAAAGTGAAACTTCGAGCTCTAATTCTTTGTTTTTGTCCAAAATTAAATCGGGTAGATTCATTGGCAAAGCTTAAAGAATTGAGAGAGTTGAATCTCTGTAGCAATGAAATGGAAACAATACCTGAAGGTATAGAGAAATTGGTCCACCTTAAACATTTTCATTGGTCCTCATCTCCCTACTGTTCCAATCCTCTTTCCAATCCTCTTTCCAATCTTTTTTCCAATCTTGTTCAACTGCAGTGTCTAAGACTTGATGATCGAAGACTTCCGGATGTAAGAGTGGAGGAGCTGAGTGGGTTGAGAAAGTTGGAGATCGTTGAAGTCAAGTTTTCCGGTCTACACAATTTCAATAGCTACATGAGAACAGAACACTATCGAAGACTTACTCACTATTGTGTTGGATTAAATGGATTTGGAACTTTTCGAGGAAAAAAAAATGAATTTTGTAAAGAAGTAATAGTGAAGTCATGTAATCTGGAAGGAGGAAAAGACAATGATGACTACCAGCTTGTGCTCCCTACCAATGTCCAGTTTTTCAAGATAGAAAAATGCCATCTTCCCACTGGCTTATTGGACGTTTCTCAATCCCTCAAGATGGCGACAGATTTAAAAGCATGTTTGATATCAAAATGCAAGGGGATAGAATACTTGTGGTCGGTAGAGGACTGCATTGCCTCATTAAACTGGTTGTTTCTTAAGGATTTGCCAAGCTTAAGGGTTCTCTTCAAATTGAGACCAATCGATATTGTACGTTGTTCCAGTCTCAAGCACTTGTACGTGAAAGAAGAAGAAGAAGAAGTCATTAATCAAAGGCATAATCTCATCCTCTATTTCCCCAACTTACAGAGTTTGACGTTGGAAAATCTACCAAAATTGAAGAGCATATGGAAGGGAACAATGACTTGTGATTCTCTACAACTTACAGTATGGAATTGCCCAGAGCTTAGAAGGCTTCCTCTTTCTGTGCAAATAAACGATGGTAGTGGAGAAAGACGAGCTTCAACACCGCCCCTCAAACAAATCAGAGGAGAAAAAGAGTGGTGGGATGGGTTGGAATGGAACACACCTCATGCCAAATCTATATTTGAACCCTTTACTACGTTTCAAACGGACGAGAATCCTTTTACGTTGCCGATATCATCTACTTTCATATATGATGTACAAGATATTCTTTCTGAAGATGTGTGTTTTGATGTTAGGTAA 2274 38.83 MGGIGKTTVVTHIHNRLLENRDTFGHVYWVTVSKDSSIRRLQDAIAGKINLDFSKEEDEKIRAALLSEALQKKKKFVLVLDDVWEVYVPREVGIPIGVDGGKLIITTRSRDVCLRMGCKEIIKMEPLSKVEAWELFNKTLERYNALSQKEEEIAKDIIKECGGLPLAIVTTARSMKCLLYCALFPEDYKIRRVSLIGYWIAEGLVEEMGSWQAERDRGHAILDKLENVCLLERCENGKYVKMHDVIRDMAINISTKNSRFMVKIVRNLEDLPSEIEWSNNSVERVSLMQIRKLSTLMFVPNWPKLSTLFLQNNMYSYPFRPTLDKGLPNSFFVHMLGLRVLDLSYTNIAFLPDSIYDKVKLRALILCFCPKLNRVDSLAKLKELRELNLCSNEMETIPEGIEKLVHLKHFHWSSSPYCSNPLSNPLSNLFSNLVQLQCLRLDDRRLPDVRVEELSGLRKLEIVEVKFSGLHNFNSYMRTEHYRRLTHYCVGLNGFGTFRGKKNEFCKEVIVKSCNLEGGKDNDDYQLVLPTNVQFFKIEKCHLPTGLLDVSQSLKMATDLKACLISKCKGIEYLWSVEDCIASLNWLFLKDLPSLRVLFKLRPIDIVRCSSLKHLYVKEEEEEVINQRHNLILYFPNLQSLTLENLPKLKSIWKGTMTCDSLQLTVWNCPELRRLPLSVQINDGSGERRASTPPLKQIRGEKEWWDGLEWNTPHAKSIFEPFTTFQTDENPFTLPISSTFIYDVQDILSEDVCFDVR* 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 905893 909343 - Vvi19g80 Vvi19g80 781579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g80 757 SUPERFAMILY L domain-like 235 676 - -
Vvi19g80 757 SMART LRR_typ_2 335 358 IPR003591 -
Vvi19g80 757 SMART LRR_typ_2 381 404 IPR003591 -
Vvi19g80 757 Gene3D Ribonuclease Inhibitor 250 685 IPR032675 -
Vvi19g80 757 PANTHER DISEASE RESISTANCE PROTEIN RP 176 716 IPR044974 GO:0006952
Vvi19g80 757 PANTHER DISEASE RESISTANCE PROTEIN RP 1 175 IPR044974 GO:0006952
Vvi19g80 757 Gene3D - 1 125 IPR027417 -
Vvi19g80 757 PANTHER - 1 175 - -
Vvi19g80 757 PANTHER - 176 716 - -
Vvi19g80 757 Gene3D - 127 175 IPR042197 -
Vvi19g80 757 PRINTS Disease resistance protein signature 70 84 - -
Vvi19g80 757 PRINTS Disease resistance protein signature 161 175 - -
Vvi19g80 757 PRINTS Disease resistance protein signature 333 349 - -
Vvi19g80 757 Gene3D - 176 249 IPR036388 -
Vvi19g80 757 Pfam NB-ARC domain 1 177 IPR002182 GO:0043531
Vvi19g80 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 177 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g80 K13459 RPS2; disease resistance protein RPS2 - vvi:104877551 1427.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g80 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005891 4 0 6 10 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 5 33