Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g801 ATGGCCATGCATAACCATGTCATATTCATTTCACCTTATACCCAGGTCTCATACCCCATGCAAACATACCCATTTCTTCACTACCTTTCTCTCTCTACACCGTCACCCCAAACCCACTCAAACTCATCACCACTCACGCTCATGCGTTCACTCCGCACACTCACATCTTCACTCTTAAATTCATGTCTCATACCTACTGCCCACATATCCATCACATTACCTCCATTCATTACACCCACCCATCAAACCCATTCCACATATGCCGCTGCAACCACCATTGCCTCCACATCCAATCCTTCCATCCATGCCAGCTTTCCAACACCTATACTCCACAAATCAGCACCTCAGGTGGCATTATTTTCTGCTCGGGGACCCAATATAAGAGATTTCAACTTCCAAGATGTGGATCTTCTCAAACTAGATATTCTAGCTCCAGGTTCTCTCATTTGGGCTGCCTGGTCTCCAAATGGAACGGATGAGGCCAATTATGTTGGAGAAGGGTTTGCAATGGTCTCCGGAACTAGCATGGCTGCACCACATATAGCTGGAATAGCTGCCCTACAGAAGGACCGTCATTGGGATTAA 585 46.67 MAMHNHVIFISPYTQVSYPMQTYPFLHYLSLSTPSPQTHSNSSPLTLMRSLRTLTSSLLNSCLIPTAHISITLPPFITPTHQTHSTYAAATTIASTSNPSIHASFPTPILHKSAPQVALFSARGPNIRDFNFQDVDLLKLDILAPGSLIWAAWSPNGTDEANYVGEGFAMVSGTSMAAPHIAGIAALQKDRHWD* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10840647 10841808 + Vvi19g801 Vvi19g801 782300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g801 194 Gene3D Peptidase S8/S53 domain 71 194 IPR036852 GO:0004252|GO:0006508
Vvi19g801 194 SUPERFAMILY Subtilisin-like 82 194 IPR036852 GO:0004252|GO:0006508
Vvi19g801 194 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 95 192 IPR045051 -
Vvi19g801 194 PANTHER CUCUMISIN-RELATED 95 192 - -
Vvi19g801 194 ProSitePatterns Serine proteases, subtilase family, serine active site. 173 183 IPR023828 -
Vvi19g801 194 ProSiteProfiles Serine proteases, subtilase domain profile. 1 194 - -
Vvi19g801 194 Pfam Subtilase family 82 190 IPR000209 GO:0006508|GO:0008236
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g801 - - - vri:117925010 166.777
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g801 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .