Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g802 ATGGCGTCTTCATCAAGCAGTGGGCTCACATTCAAGCTCCATCCGCTGGTAATTGTTAACATATCGGATCACTACACGAGAGTGAAATCTCAGACTCAACCTCCTCATCTTAGTAGCAATGGAGGCGAGGGAGCTGCAGCGGCCGCATCGCCTCCGCCTCCTCCACCCAGGGTCTTCGGTTGCGTGATTGGGGTCCAGAGAGGACGCACTGTTGAGATCTTTAACAGTTTTGAACTTCTGTATGATCCATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCTTTGATGGATATTAATGAAAGCCCTGTCTATGTTCTTCTCAATCCGTCAATCAATCATGCACAAAAGGATCTCCCTGTGACTATCTATGAAAGTGAGCTGCATGTCATAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCATCTGATGGAGGTTCTGCTGCAACTCAATTGGCTGCCCACCTCACGGGGATACATAGTGCCATCAAGATGCTAAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGGGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTACGGAGATTGCCAGCCATTGAATCAGGGAAGTTTCAAGATGATTTTTTGATGGAATACAATGATACATTATTGATTAGTTACCTTGCCATGTTCACCAACTGCTCAAGTACAATGAATGAGCTGGTCGACAAATTCAACACAGCATATGACAGGCACAGTCGAAGGGGTGGACGAACTGCTTTTATCTGA 954 43.71 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQTQPPHLSSNGGEGAAAAASPPPPPPRVFGCVIGVQRGRTVEIFNSFELLYDPSTHSLDRSFLEKKQELYKKVFPNFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGIPQLIFVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLLAMQKGDIPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 10934466 10947175 - Vvi19g802 Vvi19g802 782301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g802 317 Pfam Maintenance of mitochondrial structure and function 184 298 IPR024969 -
Vvi19g802 317 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 317 - -
Vvi19g802 317 MobiDBLite consensus disorder prediction 29 53 - -
Vvi19g802 317 CDD MPN_CSN6 9 313 IPR033859 GO:0000338|GO:0008180
Vvi19g802 317 Gene3D Cytidine Deaminase, domain 2 1 198 - -
Vvi19g802 317 SMART pad1_6 10 163 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi19g802 317 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 317 - -
Vvi19g802 317 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 136 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi19g802 317 ProSiteProfiles MPN domain profile. 11 164 IPR037518 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g802 K12179 COPS6, CSN6; COP9 signalosome complex subunit 6 - vvi:100246357 617.846
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g802 . . . Bda09g00455 . Bpe08g01071 . . . . Cma01g01037 . Car01g00912 . . . Cpe02g00854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01230 . . Cmo01g01076 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006191 2 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 38