Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g813 ATGGAGATAGCATATGATTCAGTTTTAATCTTCTGTGCCTTTGCTCTTTTATCATTGGCATGGAGAGCATTTTATTTGGTGTGGCTGAGGCCGAGGAGGCTTGAGAGGTGCCTTAGACGGCAAGGCCTTATGGGAAACTCTTACAGACCATTGCACGGAGACGCAAAGAAGGTTTCAATAATGTTAAAAGAGGCCAACTCAAGACCCATAAATCTCTCAGATGATATAGTGCCGCGCGTCATTCCTTTTCTCTATAAAACCATCCAGCAGTATGGTAAAAATTCCTTCACGTGGGTTGGTCCAATTCCGAGAGTGAATATCATGAAGCCTGAACTGATAAGGGAGGTCTTCCTCGAGGCTGGTCGCTTTCAAAAGCAAAAACCAAATCCGCTAGCCAATTTTCTTCTAACAGGACTTGTAAGCTATGAGGGTGAGAAATGGGCTAAGCACAGAAAGCTTCTGAATCCAGCATTCCATGTAGAGAAATTGAAGCTTATGTCACCTGCATTTCATTTGAGTTGTCGCCAAATGATAAGCAAAATGGAGGAGATGGTATCCCCAGAGGGGTCCTGTGAATTGGATGTTTGGCCCTTTCTAAAAAATTTGACAGCTGATGCCCTCTCTCGAACCGCATTTGGTTCTAGCTATGAAGAAGGAAGAAGGTTATTCCAACTCCTACAAGAACAAACATATCTAACCATGGAGGTCTTTCAATCAGTATACATTCCTGGATGGTGGTATTTGCCAACGAAAAGGAACAAGAGGATGAAGAAAATTGACAAAGAGATGAACACATTTATGCAAGAAGTCATTGAGGAGTGTAAGCTATTCTACTTAGCTGGCCAAGAGACTACCTCAAATTTACTTCTCTGGACAATGGTTTTGTTAAGCAAGCATCCAAACTGGCAAACACTGGCAAGGGAAGAAGTTTTTCAAGTTTTTGGGAAAAATAAGCCAGAATTTGCTGGCTTAAGTCGCCTAAAAGTTGTTACAATGATTTTCTATGAGGTCCTTAGGCTATATCCACCAGGTGCCACACTTAATCGAGCTGTTTATGAGGACATCAATCTGGGGGAACTTTATTTACCATCTGGAGTGGAGATTGTACTGCCCACCATCCTAGTGCATCATGATCCTGAAATTTGGGGAGATGATGTGAAGGAGTTCAAACCAGAGAGGTTCTCTGAAGGTGTTATGAAGGCAACAAAAGGGCAAGTCTCCTACTTTCCATTCGGCTGGGGTCCTCGCATATGCATCGGACAAAACTTTGCAATGGCAGAAGCAAAAATGGCGCTGGCAATGATACTACAATGCTTCACATTTGAGCTTTCACCATCATATACTCATGCTCCTACTTCTGTTTTAACTTTGCAACCCCAATATGGTGCGCACTTGATTTTACATAAAATCTAG 1413 42.39 MEIAYDSVLIFCAFALLSLAWRAFYLVWLRPRRLERCLRRQGLMGNSYRPLHGDAKKVSIMLKEANSRPINLSDDIVPRVIPFLYKTIQQYGKNSFTWVGPIPRVNIMKPELIREVFLEAGRFQKQKPNPLANFLLTGLVSYEGEKWAKHRKLLNPAFHVEKLKLMSPAFHLSCRQMISKMEEMVSPEGSCELDVWPFLKNLTADALSRTAFGSSYEEGRRLFQLLQEQTYLTMEVFQSVYIPGWWYLPTKRNKRMKKIDKEMNTFMQEVIEECKLFYLAGQETTSNLLLWTMVLLSKHPNWQTLAREEVFQVFGKNKPEFAGLSRLKVVTMIFYEVLRLYPPGATLNRAVYEDINLGELYLPSGVEIVLPTILVHHDPEIWGDDVKEFKPERFSEGVMKATKGQVSYFPFGWGPRICIGQNFAMAEAKMALAMILQCFTFELSPSYTHAPTSVLTLQPQYGAHLILHKI* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 11236193 11240828 + Vvi19g813 Vvi19g813 782312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g813 470 Gene3D Cytochrome P450 32 271 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 SUPERFAMILY Cytochrome P450 78 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 Gene3D Cytochrome P450 272 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 PANTHER CYTOCHROME 267 468 - -
Vvi19g813 470 PANTHER CYTOCHROME 16 268 - -
Vvi19g813 470 PANTHER CYTOCHROME P450 FAMILY MEMBER 16 268 - -
Vvi19g813 470 PANTHER CYTOCHROME P450 FAMILY MEMBER 267 468 - -
Vvi19g813 470 PRINTS Group II E-class P450 signature 144 164 IPR002402 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 PRINTS Group II E-class P450 signature 201 219 IPR002402 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 PRINTS Group II E-class P450 signature 365 380 IPR002402 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 Pfam Cytochrome P450 87 275 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 Pfam Cytochrome P450 277 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 411 420 IPR017972 GO:0005506|GO:0016705
Vvi19g813 470 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 PRINTS P450 superfamily signature 332 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 PRINTS P450 superfamily signature 409 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g813 470 PRINTS P450 superfamily signature 418 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g813 - - vvi:100264184 924.08