Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g82 ATGGAAGAGGAGGTGATCCACCACCTTCATCACCATCATCACAATCTCAATCATAATCATGTGGTTCATCAGTTCTTGTCGAAGCCTCTTCAAAACGGCGTCGTTCCTCCGGCGACCAGCGTTCATGAATTGCTTGAGTGCCCCGTGTGCACCAATTCCATGTACCCACCAATCCACCAGTGCCACAATGGACACACGCTGTGCTCTACCTGTATGTTAGGGGGTTTGGAGGTGGAAACGGTGTCGCTTTGGGGGTGGTGGGTGGTCGGAATGACGTCGGGGACGAGGCTGCCGACATGGAAGGAGAGGGAGAACAACAATAGGAGAGAGCGGCGGAGAAGGGCCATCGCGGCGAAGATTTTTTCCAGACTGAGAATGTACGGAAACTACAAGCTCCCCAAGCATTGCGACAACAACGAAGTCCTCAAAGCCCTTTGCAACAAGGCCGGATGGACCGTCGAGCTCGACGGCACCACCTACCGGAAGTATCGCGCGGATAATTCTGATCACGGAGGAGAAACTCGCTCCCCGCCTGTTCCCGGCACACGTTATCTAGGGCTTACAACTCCCTTGGCCGGTGGCAATTGGGCGGGGTTGGGAATGGGCCAGATCCGGTGCATCGTGCTCCTCGTTGGTGCTAGATTGCACGGGTACGGTGGAATGGGACACATCCTCATGCCAAATCTGTTTTTCAACTCCTTTGTACAAGGAAAAGGTTTCAGAGTGGCTAAAAAACAATTGGGGTCACAAGTCGTTGGAGTGAGACTATGGACAATATTTTTGAAGTGTAATTGA 795 52.7 MEEEVIHHLHHHHHNLNHNHVVHQFLSKPLQNGVVPPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCMLGGLEVETVSLWGWWVVGMTSGTRLPTWKERENNNRRERRRRAIAAKIFSRLRMYGNYKLPKHCDNNEVLKALCNKAGWTVELDGTTYRKYRADNSDHGGETRSPPVPGTRYLGLTTPLAGGNWAGLGMGQIRCIVLLVGARLHGYGGMGHILMPNLFFNSFVQGKGFRVAKKQLGSQVVGVRLWTIFLKCN* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 917966 921705 - Vvi19g82 Vvi19g82 781581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g82 264 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 56 162 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vvi19g82 264 Pfam BES1/BZR1 plant transcription factor, N-terminal 93 165 IPR008540 -
Vvi19g82 264 CDD RING-HC_SIAHs 45 71 - -
Vvi19g82 264 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 56 162 - -
Vvi19g82 264 SUPERFAMILY RING/U-box 34 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g82 - - K04506 vvi:100252009 129.413
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g82 . . . . . . Bma10g00457 . Cmo16g00463 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0204 . . . . . . . . . . Bda12g00814 . . . . . . . . Cma16g00431 . . Cpe14g00363 . . . . . . . . . . . . . . . . Csa04g00815 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14447 PF05687 BES1_N 2.00E-41 No_clan Vvi TF