Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g826 ATGGCGCAGAATGCTGATGAATATGCTCCAGTCTCTTCCCCTTCATCTTTGCAAAGGATTAGCAGCTCCGAATTCTATGAAGCAGGTTTAATCTATTACTTGGAACTGTACCAAGCTGTGCTCAATGGTGACTGGGAAAGTGCTTCAAAAATATTGGAGGATGATCCACAATCATTGTCCGCCCCGATCGGAACAGATGATTCCCCAGTGCTTCACATAGCAGTTGGGTTAGGAGAGGCCAGAATGGGTTTCGTGAAGAAGTTGGTTGAGTTTATGCCAAGTGATAAACTGGCTCTGCAGGATTCTGATGGCGCCACTGCCCTTTTCAACGCTGTAAGTGCTGGCAATATAAAAGCAGTCAAGTTGTTAGTGAACAAAAACCCAAGCTTGCCCAATATCTGCCAACTACAACTTTTAGTGCCTCTTCACAGCGCTCTTAGGTGTGCTCATAAAGAGCTGACTTTATATTTATTAACCGTCACCAGAGATGATGTAGATCCAAGTCCTTTCGCAGACAAGCCTGGATTCGAACTTTTGCGCAGAGCTCTAATGGTGGGGTTTCATGATGTAGCACTGTATCTGGTTAAACGTTATCCTGACCTTGCCACATGCCATTTCGATTCCGCCCGCCACGATGATGCAAATGATTCTGATGAGGATTTTTCCCTTTTGACTGTATTGGCTAAAAGGCCTTGGGCTTTCCGAAGTGGAAGTTGCTTCAAATTATGGCAACTCATGATATATCACTGTTAG 753 44.62 MAQNADEYAPVSSPSSLQRISSSEFYEAGLIYYLELYQAVLNGDWESASKILEDDPQSLSAPIGTDDSPVLHIAVGLGEARMGFVKKLVEFMPSDKLALQDSDGATALFNAVSAGNIKAVKLLVNKNPSLPNICQLQLLVPLHSALRCAHKELTLYLLTVTRDDVDPSPFADKPGFELLRRALMVGFHDVALYLVKRYPDLATCHFDSARHDDANDSDEDFSLLTVLAKRPWAFRSGSCFKLWQLMIYHC* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 11696502 11698110 - Vvi19g826 Vvi19g826 782325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g826 250 Gene3D - 34 229 IPR036770 -
Vvi19g826 250 SMART ANK_2a 137 167 IPR002110 GO:0005515
Vvi19g826 250 SMART ANK_2a 174 203 IPR002110 GO:0005515
Vvi19g826 250 SMART ANK_2a 66 98 IPR002110 GO:0005515
Vvi19g826 250 SMART ANK_2a 103 133 IPR002110 GO:0005515
Vvi19g826 250 Pfam Ankyrin repeats (3 copies) 36 127 IPR002110 GO:0005515
Vvi19g826 250 PANTHER - 21 175 - -
Vvi19g826 250 PANTHER CASKIN 21 175 - -
Vvi19g826 250 SUPERFAMILY Ankyrin repeat 36 197 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g826 - - - vvi:104877648 383.259
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g826 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .