Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g83 ATGGAAGTGCAACTTGTGAAAGACGGTGCACAACAGATAGAGCAGGAAGCTGGAGAGAGAAGATATTTTTCAAGATTAAGTTTCCTAAGCCAATTTGAAGCGAATATGAACAAGGTAGATGAGATGTTTGAGTTGGGGAATTTTCCTAATGAGATTTTAATTGATGTACATCAAGATGAAGGAAATGCATTGTTAACAGCACAGCTAATAGGTGAAACTACAGCCAAAAGAAATTTGGAGAACATTTGGACATGCTTAGAGAAAGGTGAAATCCAAAGCATTGGAGTTTGGGGAATGGGAGGGATTGGCAAACAACTGTCGTTACTCATATTCACAATCGGCTCTTGGAAAATAGGGACACTTTCGGCCATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTAGGTTGCAGGATGCTATTGCTAGAAAAATATATTTAGATTTCTCAAAAGAGGAAGATGAAAAGATAAGAGCTGCTTTATTATCAAAAGCATTGCTAAGGGAAAAGAAATTTGTTCTTGTATTAGATGATGTATGGGAAGTTTATGCCCCACGGGAGGTTGGAATTCCAATTGGAGTTGATGGAGGAAAACTGATCATAACCACCAGATCAAGGGATGTGTGCCTAAGAATGGGATGCAAAGAAATTATCAAAATGGAACCACTTTCTGAGGTAGAAGCATGGGAGCTTTTCAACAAAACACTTGAGCGGTACAATGCACTGAGTCAAAAAGAAAAAGAAATAGCCAAGGATATTATCAAGGAATGTGGCGGTTTGCCTCTTGCCATTGTCACTACAGCTAGAAGTATGAGTGTTGTGTATAGCATTGCTGGATGGAGAAATGCATTGAATGAGTTGAGGGAACATGTTAAAGGGCACACAATCGACATGGAAAAGGATGTATTTAAAATATTGGAATTCAGCTACAATCGCTTGAATAATGAAAAACTTCAAGAATGTTTATTGTACTGTGCATTGTTTCCTGAAGATTATGAGATTAGAAGAGTGTCTTTGATCGGATACTGGATTGCTGAGGGGTTGGTAGAAGAAATGGGAAGTTGGCAAGCAGAGCGTGATAGAGGGCATGCTATATTGGACAAACTTGAAAATGTGTGTTTGTTGGAAAGATGTCATAATGGAAAATATGTAAAGATGCATGATGTGATCAGGGACATGGCTATCAACATAACGAAAAAGAATTCTCGATTCATGGTGAAAATCATAAGAAATCTGGAAGATCTCTCAAGCAAGATAGAGTGGTCAAATAATAATGTAGAAAGAGTTTCATTAATGCCAAGCGACGAACTTTCAACTTTGATGTTTGTACCAAACTGGCCTAAGCTTTCCACCCTGTTTCTTCAAAAAGACAAGTTTCCTATATGGAATTGCCCAGAGCTTAGAAGGCTTCCTCTTTCTGTGCAAATAAACGATGGTAGTGGAGAAAGACGAGCTTCAACACCGGCCCTCAAACAAATCAGAGGACAAAAAGAGTGGTGGGATGGGTTGGAATGGAACACACCTCATGCCAAATCTATATTTGAACCCTTTACTACGTTTCAAACGGACGAGAATCCTTTTACGTCGCCGATACTATTTGCTTTCATAAATGATGTACAAGATATTTTTGAAGATGTAGAAGAAAGAAGAAAAGAACCTCCTTTTGAGGGGCTGTTTGGTTCTCGGAAATCCATCCACCTTCTCTCTCCATCTTCCTCTCTCTATCTATCTCATTTTCTCTATCCTGAAAGAAAACGCGAGAAACTGACTGAAAAATTGCAGAGAGAGAAGAAGATATTGAAAATTGTGGGAATTTTTTTTTTGTTTTTTGAAATTTCTAGAGGGGTTCTGGGCGTGTGTTAA 1863 38.06 MEVQLVKDGAQQIEQEAGERRYFSRLSFLSQFEANMNKVDEMFELGNFPNEILIDVHQDEGNALLTAQLIGETTAKRNLENIWTCLEKGEIQSIGVWGMGGIGKQLSLLIFTIGSWKIGTLSAMSXXXXXXXXXRRLQDAIARKIYLDFSKEEDEKIRAALLSKALLREKKFVLVLDDVWEVYAPREVGIPIGVDGGKLIITTRSRDVCLRMGCKEIIKMEPLSEVEAWELFNKTLERYNALSQKEKEIAKDIIKECGGLPLAIVTTARSMSVVYSIAGWRNALNELREHVKGHTIDMEKDVFKILEFSYNRLNNEKLQECLLYCALFPEDYEIRRVSLIGYWIAEGLVEEMGSWQAERDRGHAILDKLENVCLLERCHNGKYVKMHDVIRDMAINITKKNSRFMVKIIRNLEDLSSKIEWSNNNVERVSLMPSDELSTLMFVPNWPKLSTLFLQKDKFPIWNCPELRRLPLSVQINDGSGERRASTPALKQIRGQKEWWDGLEWNTPHAKSIFEPFTTFQTDENPFTSPILFAFINDVQDIFEDVEERRKEPPFEGLFGSRKSIHLLSPSSSLYLSHFLYPERKREKLTEKLQREKKILKIVGIFFLFFEISRGVLGVC* 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 921704 942345 - Vvi19g83 Vvi19g83 781582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g83 620 Gene3D - 222 309 IPR042197 -
Vvi19g83 620 PRINTS Disease resistance protein signature 93 108 - -
Vvi19g83 620 PRINTS Disease resistance protein signature 166 180 - -
Vvi19g83 620 PRINTS Disease resistance protein signature 257 271 - -
Vvi19g83 620 PANTHER DISEASE RESISTANCE PROTEIN RP 49 458 IPR044974 GO:0006952
Vvi19g83 620 Pfam NB-ARC domain 77 311 IPR002182 GO:0043531
Vvi19g83 620 Gene3D - 57 219 IPR027417 -
Vvi19g83 620 PANTHER - 49 458 - -
Vvi19g83 620 Gene3D - 310 396 IPR036388 -
Vvi19g83 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 325 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g83 K13459 RPS2; disease resistance protein RPS2 - vvi:104877551 785.793
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005891 4 0 6 10 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 5 33