Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g839 ATGAAACTTGGATATGACAAAAGGGCTGGAAAAACATGGTCATTGGTGTCATGGAAGAGCAGAGAAGATCCCAGTCCAGGAGCTTTCTCCATAGAACACGACGCGAATGAAAGTAGCCAGATTTTTAACCTGCAAGGACCCAAAATGTATTGGACTAGTGGGGTGTGGGATGGGCAGATTTTCAGCCAGGTTCCTGAGATGCGTTTCATCTACATGTACAAGTACAATACATCCTTTAATGAGAATGAAAGCTATTTTTCTTACTCTCTTCATAATCCCTCCATTCTGAGCAGAGTGGTGCTAGATGTGTCAGGCCAGGTTAGGCGTCTGAATTGTCATGAAGGCACACATGAATGGGATTTATATTGGCTTCAACCAAAAACACAGTGTGAGGTTTATGCTTACTGTGGGCCTTTCGGAACCTGCACTCGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCGCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCGTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACAATACAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATAGCTGCCCTTGCTCCGCTTATGCTTATGAGGGAGAGGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGGTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCGAGTGGAAGGTATGGCTAATTGTTACACTGGCCATATCTTTAACTTCAGCCTTTGTCATTTATGGGATATGGGGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTACTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGGCGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTGTAATGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAAGATATGAAGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGGGATGAGAAGATATTGATTTACGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTACAAAACATGGGATTCTGAATTGGAAGACATGGGTTCACATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTGCATCAGTACTCCAGAATGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTAGATAAGGATATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGGCAACGAACCAAAAGCAACAAATCATATAGTTGGGACTTATGGCTATATGTCTCCTGAGTATGCTTTGGAAGGTCTTTTCTCCACTAAATCTGATGTCTTTAGCTTTGGGGTCTTGTTAATGGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAACCGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAGACAGCAGGGGGCAGGAGTTGATGGATCCAGGGTTGGAAGAGACTTCGCCAACACACATTTTGTTGAGGTACATCAATGTAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGACAGGCCTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATCCCAAAACAGGCCTGGAATTTATTCCTTAAATGGTGTGACACTTTCAGTTATGGAAGCACGATAA 2025 42.67 MKLGYDKRAGKTWSLVSWKSREDPSPGAFSIEHDANESSQIFNLQGPKMYWTSGVWDGQIFSQVPEMRFIYMYKYNTSFNENESYFSYSLHNPSILSRVVLDVSGQVRRLNCHEGTHEWDLYWLQPKTQCEVYAYCGPFGTCTRDSVEFCECLPGFEPRFPEDWNLQDRSGGCVRKADLQCVNESHANGERDQFRLVSNVRLPKYPVTIQARSAMECESICLNSCPCSAYAYEGEECRIWGGDLVNVEQLPDGDSNGRSFYIKLAASELNKRVSSSEWKVWLIVTLAISLTSAFVIYGIWGRFRRKGEDLLLFDFGNSSEDTSCYELGETNRLWRGEKKEVDLPMFSFASVSASTNNFCNENKLGEGGFGSVYKGKSQRRYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPTKHGILNWKTWVHIIEGVAQGLLYLHQYSRMRIIHRDLKASNILLDKDMNPKISDFGMARIFGGNEPKATNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLMEILSGKKNTGFYQTDSLNLLGYAWDLWKDSRGQELMDPGLEETSPTHILLRYINVGLLCVQESADDRPTMSDVVSMLGNESVRLPSPKQPAFSNLRSGVEPHISQNRPGIYSLNGVTLSVMEAR* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 12246637 12249791 + Vvi19g839 Vvi19g839 782338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g839 674 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 1 673 - -
Vvi19g839 674 Pfam S-locus glycoprotein domain 51 159 IPR000858 GO:0048544
Vvi19g839 674 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Vvi19g839 674 Pfam Protein tyrosine and serine/threonine kinase 361 627 IPR001245 GO:0004672|GO:0006468
Vvi19g839 674 Pfam PAN-like domain 189 247 IPR003609 -
Vvi19g839 674 CDD PAN_AP_plant 178 265 - -
Vvi19g839 674 ProSiteProfiles Protein kinase domain profile. 358 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g839 674 SMART serkin_6 358 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g839 674 SUPERFAMILY Hairpin loop containing domain-like 191 247 - -
Vvi19g839 674 CDD STKc_IRAK 364 627 - -
Vvi19g839 674 SUPERFAMILY Protein kinase-like (PK-like) 342 649 IPR011009 -
Vvi19g839 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vvi19g839 674 Gene3D Phosphorylase Kinase; domain 1 334 433 - -
Vvi19g839 674 Gene3D Transferase(Phosphotransferase) domain 1 434 636 - -
Vvi19g839 674 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 673 - -
Vvi19g839 674 SMART ntp_6 189 264 IPR003609 -
Vvi19g839 674 ProSiteProfiles PAN/Apple domain profile. 181 265 IPR003609 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76480 PF07714 PK_Tyr_Ser-Thr 1.80E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g839 - - vvi:100267572 1312.36