Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g84 ATGGAGTACGTGGAAGCAGTGCTAACAAGCATTGGGCTATTGAAGGATATGTGGCCCTCCATTTCTAAGTGCTTCAACTATCACAAAATTCTTGATAAGAATTGCAGAACTCTCAAAGAGAAAATGGAGAGATTGAAGAGTCGTGAACAAGATGTCAAAATTGAATTACAAAATGCACAATATCAGCGAAAGAAAGAAAAAAAAGAAGTTGAAAATTGGTTGAAAGAAGTGCAAAATATGAAAGATGATCTGGAAAGGATGGAACAAGAAGTTGGAAAAGGAAGAATTTTCTCAAGATTGGGGTTTCTAAGGCAGTCTGAAGAGCATATAGAAAAAGTAGATGAGCTACTTGAACGCGGTAGATTTCCTGAAGGGATTTTGATTGATGTACTTCGAGATGAAGGAAGGGCATTGTTAACAACACAACTAATAGGTGAAACTACAACCAAAAGAAATTTAGAGAAGATCTGGACATGCTTAGAGAAAGGTGAAATCCAAAGCATTGGAGTTTGGGGAATGGGGGGGATCGGCAAAACAACTATTGTTACTCATATTCACAATCTCCTCTTGGAAAAAAAGGATACTTTCGGCCTTGTCTATTGGGTGACTGTATCAAAAGATTCAAGTGTTCGCAAGTTACAAGATGTCATTGCTGAGAAAATAAATTTAGATTTATCAAAAGAAGAAGATGAAAGGTTAAGATCTGCTTTATTATTTGAAGCATTGCAGAAAGAAAAGAAATTTGTGCTTATATTTGATGATGTGTGGGAGGTTTATCCACCACGGGAGGTTGGAATTCCAATTGGAGTTGATAGAGGAAAACTCATAATAACCACCAGATCAAGAGAAGTGTGCCTAAAAATGGGGTGCAAGGAAATCATCAAAGTGGAACCTCTTTATGAGGAAGAAGCGTGGGAGCTTTTCAACAAAACACTTGAGCGGTACAATGCACTTAGCCAAAAAGAAGAAAAAATAGCCAAGGACATTGTCAGGGAATGTGCAGGTTTACCTCTTGCCATCGTCACAACAGCTAGAAGTATGAGTGTTGCATATGACATTGCTGAATGGAGGAATGCATTGAATGAATTGAGGGAACATGTTAAAGGGCACACAATTAACATGGAAAATGATGTATTTAAAATATTGGAATTCAGCTACAATCGCTTGAATGATGAAAAACTTCAAGAATGTTTGTTGTACTGTGCATTGTTTCCCGAAGATTATAAGATTAGAAGGGTGTTGTTGATCAGATATTGGATTGCTGAGGGGCTTATAGAAGAAATGGGAAGTAGGCAAGCAGAGCGTGATAGAGGGCATGCTATACTGAATAAACTTGAAAATGTGTGTTTGTTGGAAAAATGTGAGAATGGAAAATGTGTAAAGATGCATGATGTGATCAGGGACATGGCTATCAATATAACAAGAAAGAATTCTCGATTCATGGTGAAAACTAGAAGAAATCTGGAAGATCTGCCAAACGAGATAGAGTGGTCAAATAATGTAGAAAGAGTTTCACTAATGGATAGCCATCTTTCAACTTTGATGTTTGTACCAAATTGCCCTAAGCTTTCCACATTGTTTCTTCAAAAACCCAAGTTTTCTTATCCACCTAAAGGTCTACATGAAGGTCTTCCAAATTCCTTCTTTGTGCACATGCTGAGCCTTAGAGTTCTGGACCTGTCATGCACAAACATTGCATTGCTACCAGATTCTATCTATGACATGGTGAATCTTCGAGCTCTAATTCTTTGTGAATGTCGAGAATTAAAGCAAGTAGGTTCATTAGCAAAGCTTAAGGAATTGAGAGAGTTGGATCTCAGTTGGAATGAAATGGAAACAATACCTAATGGGATAGAGGAATTGTGTCTAAGACATGATGGTGAGAAATTTCTGGATGTAGGAGTGGAGGAGTTGAGTGGGTTGAGAAAGTTGGAGGTCCTTGATGTCAATTTCTCCAGCCTACACAATTTCAATAGCTACATGAAGACACAACACTACCGGAGACTTACTCACTATCGTGTTCGATTAAGTGGAAGGGAATATTCTAGGCTTCTAGGGTCGCAAAGAAATCGACATGGTTTTTGTAAAGAAGTAGAAGTGTGGGAATGTAAGCTGACAGAAGGAGGGAAAGACAATGATGACTACCAACTTGTGCTCCCTACCAATGTCCAGTTTTTGCAGATATATACATGTAATGATCCCACTAGCCTATTGGATGTTTCTCCATCTCTCAAGATTGCCACCGATTTAAAAGCATGTTTGATATCAAAATGCGAGGGGATAAAATACTTGTGTCTCAAGCACTTGTACGTGAGTAAATGCCACAATCTAAAGCACTTGCTCACGCTTGAGTTAGTGAAGAACCACCTCCAAAACCTTCAAAACATCTATGTCCGTAGTTGCAGTCAAATGGAGGATATAATAGTAGGAGTAGAAGAAGAAGATATAAATGAAAAGAATAATCCCATTCTCTGTTTTCCCAACTTTCGATGTTTGGAGTTGGTTGATCTACCAAAACTAAAGGGCATATGGAAGGGAACAATGACTTGTGATTCCCTTCAACACCTTTTAGTATTGAAATGTCGAAATCTTAAAAGGCTCCCTTTTGCGGTTTCGGTGCACATAAACGATGGTAATGGCCAAAGAAGAGCTTCAACACCACCCCTCAAGCAAATCGGAGGAGACAAAGAATGGTGGGATGGGGTGGAATGGGACACACATCCTCATGCCAAATCTGTTTTTCAACCCCTATTTGTACAAGGAAAAGGTTTCAGAGTAAGTATAATTTTTTATTTTATGTATATGGATTTGATGAAGAATCTGTTTGATCAAGTACAAAGTCAAGATAATCTAACACTTTATTTTTATTTTTTTGGTTTCATGCAGTGGCTAAAAAACAATTGGGTCACAAGTCGTTGGAGAGAGACTGTGGACAATATATTTGAAGAAGTGTAA 2955 38.1 MEYVEAVLTSIGLLKDMWPSISKCFNYHKILDKNCRTLKEKMERLKSREQDVKIELQNAQYQRKKEKKEVENWLKEVQNMKDDLERMEQEVGKGRIFSRLGFLRQSEEHIEKVDELLERGRFPEGILIDVLRDEGRALLTTQLIGETTTKRNLEKIWTCLEKGEIQSIGVWGMGGIGKTTIVTHIHNLLLEKKDTFGLVYWVTVSKDSSVRKLQDVIAEKINLDLSKEEDERLRSALLFEALQKEKKFVLIFDDVWEVYPPREVGIPIGVDRGKLIITTRSREVCLKMGCKEIIKVEPLYEEEAWELFNKTLERYNALSQKEEKIAKDIVRECAGLPLAIVTTARSMSVAYDIAEWRNALNELREHVKGHTINMENDVFKILEFSYNRLNDEKLQECLLYCALFPEDYKIRRVLLIRYWIAEGLIEEMGSRQAERDRGHAILNKLENVCLLEKCENGKCVKMHDVIRDMAINITRKNSRFMVKTRRNLEDLPNEIEWSNNVERVSLMDSHLSTLMFVPNCPKLSTLFLQKPKFSYPPKGLHEGLPNSFFVHMLSLRVLDLSCTNIALLPDSIYDMVNLRALILCECRELKQVGSLAKLKELRELDLSWNEMETIPNGIEELCLRHDGEKFLDVGVEELSGLRKLEVLDVNFSSLHNFNSYMKTQHYRRLTHYRVRLSGREYSRLLGSQRNRHGFCKEVEVWECKLTEGGKDNDDYQLVLPTNVQFLQIYTCNDPTSLLDVSPSLKIATDLKACLISKCEGIKYLCLKHLYVSKCHNLKHLLTLELVKNHLQNLQNIYVRSCSQMEDIIVGVEEEDINEKNNPILCFPNFRCLELVDLPKLKGIWKGTMTCDSLQHLLVLKCRNLKRLPFAVSVHINDGNGQRRASTPPLKQIGGDKEWWDGVEWDTHPHAKSVFQPLFVQGKGFRVSIIFYFMYMDLMKNLFDQVQSQDNLTLYFYFFGFMQWLKNNWVTSRWRETVDNIFEEV* 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 955251 960645 - Vvi19g84 Vvi19g84 781583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g84 984 CDD AAA 175 260 - -
Vvi19g84 984 Gene3D - 386 470 IPR036388 -
Vvi19g84 984 PANTHER DISEASE RESISTANCE PROTEIN RP 40 898 IPR044974 GO:0006952
Vvi19g84 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 401 IPR027417 -
Vvi19g84 984 PRINTS Disease resistance protein signature 167 182 - -
Vvi19g84 984 PRINTS Disease resistance protein signature 242 256 - -
Vvi19g84 984 PRINTS Disease resistance protein signature 333 347 - -
Vvi19g84 984 PRINTS Disease resistance protein signature 550 566 - -
Vvi19g84 984 SUPERFAMILY L domain-like 461 870 - -
Vvi19g84 984 Coils Coil 28 90 - -
Vvi19g84 984 Gene3D Ribonuclease Inhibitor 784 876 IPR032675 -
Vvi19g84 984 SMART LRR_typ_2 598 621 IPR003591 -
Vvi19g84 984 SMART LRR_typ_2 552 575 IPR003591 -
Vvi19g84 984 PANTHER - 40 898 - -
Vvi19g84 984 Coils Coil 353 373 - -
Vvi19g84 984 Gene3D Ribonuclease Inhibitor 471 707 IPR032675 -
Vvi19g84 984 Gene3D - 299 385 IPR042197 -
Vvi19g84 984 Pfam NB-ARC domain 151 387 IPR002182 GO:0043531
Vvi19g84 984 ProSiteProfiles Leucine-rich repeat profile. 600 621 IPR001611 GO:0005515
Vvi19g84 984 Gene3D - 135 296 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g84 K13459 RPS2; disease resistance protein RPS2 - vvi:100258875 1859.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g84 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005891 4 0 6 10 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 5 33