Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g85 ATGGGCACAGGGAACCAAATTGAACACGAAGCTTTCCTCTCCATGTGGGTTTCAAGGTTTGTTCTTCCTACAAAGTCAAATTCCACCATTGAAAAGCATGTATTTTCCATAGCGATTAGACTAGCTAGAGGGATCCCAGTTGCCCTTGGGCCTGCTGTCTTAGTAAGCATTTACCGGGATTTGAGCTTGTTGAAACAGACTACTGTGGCTCTAACCAAAATGGGAAACAATGAGAAGAAAGACAATGTCTTTGCCCTGTCACTTCTGGCCCCTCTTCGGTTTGTCCAGGTTTGGGTATGGGAGAGGTTTCCGGCTTTGAGACCACAGCCAAAACCAAAGGAATTGGGGGAACCCAGGCTTGCTCGATGGCACAAAATGAAGGGTCAAAGGGAAGAGTGGGTGCTGGTGGGCTCTGGCCTGGACCAAGAGTTGCAGGCCTTTGCTCGGTTCTTGAGGGTCTGCAAGCTGGTTGGAGTTGATGACTCTATGGAATGGTACTTCCCACATCGGGTGGGAATGCAATTTGGAATGGATCAAGATCTTCCGGGTTATGTTCACCCTTGTAATGGGACTCCTGAAGTTGCTTGGAACAATTATAGCAAACCCATTAATGGTGTGAAGTTGTACATTCCATCCCGGTTCTTTGAGGCAGATGTTACCACCAGATACCTGGAGTGGTGGAATCCATTACTAAAGAAGGAAGGTGATGATGCCCTTGTTCCTCCTGGTTTTCCTGCAAAACATAATTGGGTGGATGCAGGAGAAGGCAATGATGCCCTCGATCATTCTGGTTTTTGTGCAAAACATAGTAGGATGGATGCAGGAGATTCTAGTGATGAAGATAGAATGACAGTTGGAGCGATGTTGAAGTCCATTAGAAACCTTAAATGTGTTGGGAAGAATTCAGCGACTCCATCATTGTCAACCTCCAAGACCGGAGGTGTAAGAAATGAGTCACTGATAAATTGTGTAAATAATATTTTTCAAGGTGTAGCTGCATCAGAAAAAACCATAGAAAATGCAAATGAGAGCAGTGAGAGAACTACAGCTATGGCAGGAGGATTGGGAAGAGCCAGAGAAGATGCCAATAGGAATAATTCAGAGAGTGCGGCTATGGTGGGAGGGGCAGAGGAAGCGATGGAAAAAGAAAATGAGAGTAATGTGGGGAGTCCAGTTATGGTGGGAGAATCAGAAAAGGCCATGGAAGATGCAATCAGGAGTAGTGAAAAGAATGCGGCAACGATGAGTGGATTAGAGAAAGCCATAGAAGATGCAAATAAGATAAAGGAGAAGAGAGTGATGAGTGGCATTGGTACTATTGAGATCCCGGGACTGGATCTTGAAGCTCGAATATGCAAGCTTGAGAGGGTGAGGGATCCAGTTGCGCTTGCCCCTGCAGTTTTAGCAGGCATTTACAGGGATTTAAGTTTGAGACCGAAGAGAAGGAAGATGGGCTGCTTCGCTTGTTGCATGTCTGATCCAAATGTTGGCAGTAAGTCATTGAAGAAGAGCATTAAGGAGTATGGTGACGCCAAAAGATTAGCCTCATTCGTTAACATCTCCTTCAAATCCGATGGCAGCAAGAGAAGATACATAGCAGAAGAGATAGCAAAAATGGGCAAAGGTAGTATTCCTGCCCATGTCTTCACAATAGGTGAGCTCTCAGCTGCAACCAACAACTTCAACCATGAGGCTTTGATCGGAGAAGGCGGCTTTGGGAGGGTGTACAAAGGCCATGTAGAGAAGACAAATAATAGTGTTGCTGTTAAGAGACTAGACAGGAATGGGTTCCAAGGCAACAGAGAGTTCCTTGTAGAGGTTTTCATGTTGAGTCTTCTTCACCATACTAATCTCGTGAACATGGTCGGATATTGCTGTGATGGTGATCAAAGGATTTTGGTTTATGAGTACATGGCCAATGGTTCCTTGGAGGATCACCTTCTCGATTTGGCTCCAAACAAGAAGCCTCTGGACTGGAAGACCAGGATGAAAATCGCTGAAGGAGCAGCGAGAGGGCTCGAATACTTGCATGACACAGCCAATCCCCCGGTCATTTACCGAGACTTCAAAGCATCCAACATACTATTGGATGAGGATTTCAATCCAAAGCTCTCCGATTTTGGCCTTGCCAAGCTCGGCCCGACCGGAGACAAGACTCATGTGTCCACAAGAGTGATGGGGACTTACGGCTACTGCGCGCCTGAGTATGCACTTACAGGCCAGTTGACGACAATGTCCGATGTATACAGCTTCGGCGTCGTGCTCTTGGAGATCATCACAGGAAGAAGAGTGATCGATAATTCTAGACCGACTGAGGAGCAAAATCTTGTCACTTGGGCACAACCATTGCTTAAAGACAGAAGGAAGTTTACTCTCATGGCCGACCCCCTCCTAGAAGGAAACTACCCCATAAAGGGTCTCTACCAAGCACTTGCAGTGGCAGCCATGTGTCTGCAAGAAGAAGCCACCATCAGGCCCTTGATGAGCGATGTGGTAATGGCCCTCGAGTACCTGTCTGACAAGAGGGCTGCAGGTGTTGATGGAGATGAAGAAGACGAGGATACCAACAAGAATGAAGATGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAAGGACACAACTTCATCTGATAGAAACAGAAGTGGAGGTATTGAGACTGATCATGATGAGGACAATGGTGAATCCAATGGAAAGACAACGAAAAAGGAGGAAGATATTCAGTGA 2736 46.16 MGTGNQIEHEAFLSMWVSRFVLPTKSNSTIEKHVFSIAIRLARGIPVALGPAVLVSIYRDLSLLKQTTVALTKMGNNEKKDNVFALSLLAPLRFVQVWVWERFPALRPQPKPKELGEPRLARWHKMKGQREEWVLVGSGLDQELQAFARFLRVCKLVGVDDSMEWYFPHRVGMQFGMDQDLPGYVHPCNGTPEVAWNNYSKPINGVKLYIPSRFFEADVTTRYLEWWNPLLKKEGDDALVPPGFPAKHNWVDAGEGNDALDHSGFCAKHSRMDAGDSSDEDRMTVGAMLKSIRNLKCVGKNSATPSLSTSKTGGVRNESLINCVNNIFQGVAASEKTIENANESSERTTAMAGGLGRAREDANRNNSESAAMVGGAEEAMEKENESNVGSPVMVGESEKAMEDAIRSSEKNAATMSGLEKAIEDANKIKEKRVMSGIGTIEIPGLDLEARICKLERVRDPVALAPAVLAGIYRDLSLRPKRRKMGCFACCMSDPNVGSKSLKKSIKEYGDAKRLASFVNISFKSDGSKRRYIAEEIAKMGKGSIPAHVFTIGELSAATNNFNHEALIGEGGFGRVYKGHVEKTNNSVAVKRLDRNGFQGNREFLVEVFMLSLLHHTNLVNMVGYCCDGDQRILVYEYMANGSLEDHLLDLAPNKKPLDWKTRMKIAEGAARGLEYLHDTANPPVIYRDFKASNILLDEDFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTTMSDVYSFGVVLLEIITGRRVIDNSRPTEEQNLVTWAQPLLKDRRKFTLMADPLLEGNYPIKGLYQALAVAAMCLQEEATIRPLMSDVVMALEYLSDKRAAGVDGDEEDEDTNKNEDEGEEEEEEEEEEEIKDTTSSDRNRSGGIETDHDEDNGESNGKTTKKEEDIQ* 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 968092 977755 + Vvi19g85 Vvi19g85 781584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g85 911 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 484 862 - -
Vvi19g85 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
Vvi19g85 911 Gene3D Transferase(Phosphotransferase) domain 1 638 864 - -
Vvi19g85 911 ProSitePatterns Protein kinases ATP-binding region signature. 567 590 IPR017441 GO:0005524
Vvi19g85 911 Pfam Plant mobile domain 2 128 IPR019557 -
Vvi19g85 911 Pfam Plant mobile domain 129 228 IPR019557 -
Vvi19g85 911 MobiDBLite consensus disorder prediction 354 390 - -
Vvi19g85 911 Gene3D Phosphorylase Kinase; domain 1 523 637 - -
Vvi19g85 911 MobiDBLite consensus disorder prediction 876 911 - -
Vvi19g85 911 MobiDBLite consensus disorder prediction 849 875 - -
Vvi19g85 911 Coils Coil 857 877 - -
Vvi19g85 911 PANTHER OS07G0668900 PROTEIN 484 862 - -
Vvi19g85 911 MobiDBLite consensus disorder prediction 843 911 - -
Vvi19g85 911 Pfam Protein kinase domain 562 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g85 911 ProSiteProfiles Protein kinase domain profile. 561 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g85 911 CDD STKc_IRAK 567 836 - -
Vvi19g85 911 SUPERFAMILY Protein kinase-like (PK-like) 543 837 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76481 PF00069 Pkinase 7.80E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g85 - - vvi:104877488 895.575