Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g86 ATGCGAGGGGCTGCCTTAGCTGGGTCATGCAGGCGATGCTGTAATATATCTATGGGAGAAGTTCATCCACTCCGAGGTGCCAATGGTACTTTACCTGGTGTCATTGTTTTTAATAATACACTTCAGCGTGGGCAAAGTTTGAGTTATTGTAGGAGGCCATTTATTCAACTTAAGAAAAATGGTGAAGCCAATTGTTGTCGCTCACCTCATCATACGAAGCATGCAATTTGTTTTTCTACCTCATCAGTTTTAATACTCCCTCGCTATCCCAATTGGATTTGTGCTGAAAGAAAATGCTTTACAAGGGGTTTGGTTAACCTGCAGCATCTGCATGGCCCAGTAGAGCCAGAGGTAGGTTTTATTCCTCCTCGTGGGGCTGTTGGTTTTGGTGCTACTTCAGGGGTGACTAGGTGCAGTAACCCTGGGAGCATCTGGATTGAGGAGGCCAATAAACTGGTTGAAATAAAAAGGCAAATTTCACAAGATGGCAATGCTTATGTAAGGTCAAGCATATTTACTAAGTATCGTAGTTCAAATTCAAATGGTATTACCAGAAAAGGAAATTTGCAAAGCTCAGTAGGGCAAGGATGTATTGATCATGGCCAATTAAAAGCTCAAACTCACGGTCCGCTATATAATTCTAGTGTTCAGGGGCAAATATTTGCTGGGGACATAGGATGTGAAACAATGACTAATGACTGTGCTTCAAATGTGCTAGCTTACCCTGAAAAAATACAGGCAGGCAACAAGCATATTTCCAGGAATAATGTAAACAGTACTGCACCTCATCACTCAAGGAAGGTTGTTCAGTCTAATGGGTCACTGTCAATGAAGCCTTTGGAGGATAGGGAAGAGGCAAATTTCATATTTTCTCGGGATAGAGCTGCTGATGCAATTGAAAATGACGAATCCAATGAAAGATCCATAATACCTGCTACGGGAACACATGCTTTTTCTCAGTTGGAGGCTCGCAGGAAGCTTTCTAAGATCTATGAAAAAGTTCTCATAGTTGATGATATCTATGTTGCAAAAAAAATTGTCAGGAAGCTCACCACTCAGTACAAGCATCTTATCCATGCATGTGACACAGAGGTGGCCAACATTGATGTGAAGCGGGAAACACCTGTTGATCATGGAGAGATAATATGCTTCAGTATTTATTCTGGACCTGAAGCAGATTTTGGAAATGGAAAGTCTTGTATCTGGGTAGATGTTCTTGATGGTGGTGGGAGGGATCTTTTGGTTGAATTTGCTCCATTTTTTGAAGACCCATCAATCCAAAAGGTTTGGCACAACTATAGTTTTGACAACCATGTTATAGAGAACTATGATCTCAAAGTTTCAGGTTTTCACGCTGACACAATGCATATGGCACGGTTGTGGGATTCTTCAAGACGGGCAGTTGGTGGATATTCTCTTGAAGCACTTACACGTGACTCAAAAGTCATGTCTGGTGCTCACATGTCTAATGGAGAAGAATTGATTGGCAAAGTATCAATGAAAACCATCTTTGGCAAGAAAAAACTGAAGAAGGATGGAACTGAAGGTAAAATTATCACCATTGCTCCAGTAGAAGTGCTACAAAGAGAGGATCGGAAACCATGGATTAGTTACTCTGCATTGGATTCAATGAGCACACTCAAGCTTTATGAGAGCATGAAAAACAAACTGTTGGACAAGGAATGGCTTCTTGATGGGGCTCGTAAAGGATGCATGTTTGACTTCTATCAGAAATACTGGAGGCCCTTCGGTGAGCTTCTAGTTCAAATGGAAACTGAGGGGATGCTGGTAGATCGAGCCTACCTTTCTAAGGTGGAGAAAGTAGCCAAAGCAGAGGAACAGGTTGCTGCCAACAGATTTCGCAATTGGGCATCTAAGCATTGCCCTGATGCTAAGTACATGAATGTGGGAAGTGATACACAATTGCGCCAGCTCTTATTTGGTGGCGTTGCAAACAGAAAGGATCCCAATGAGTGTCTTCCAATGGAGAAAACTTTTAAGATTCCCAATGTTGACAAAGTGATTGAAGAAGGCAAAAAGGCACCCACAAAATTTCGGAATATTACACTAAGTAGCTTTGATGTTGAGATACCAATTGAGATGTGCACAGCATCTGGCTGGCCCTCAGTTAGTGGAGATGCCTTGAAGACCCTTGCAGGGAAGGTCTCTGCAGACTTTGATTTTATTGATGATGCTGAATGTGACTTTGAGACTACTGCCATAGAAAAGATTGATGAAGTTCCTGGAACACGAGGACCAAAAGAGAGTGAGGACACAGACATATCTGCTTATGGAACAGCTTATGCTGCTTTTGGGGAGGGGCAGGAGGGGAGGAAGGCTTGCCATGCCATTGCTGCTTTATGTGAAGTTTGCTCTATTAACTCTTTGATATCCAATTTCATCCTCCCATTGCAGGATGGTGAAATATCTGGCAAGAATGGGCGTATTCATTGTTCGCTTAATATCAACACAGAAACTGGGCGCTTGTCAGCTAGGAGACCAAATTTGCAGAACCAACCTGCTTTAGAGAAGGACCGGTATAAGATCCGCCAAGCATTTATAGCTGCACCTGGAAACTCCCTTATTGTTGCTGATTACGGACAGCTGGAACTTAGGATTCTTGCACATCTTGCCAACTGTAAAAGCATGTTGAATGCTTTCAAAGCTGGTGGAGATTTCCATTCTAGGACTGCAATGAATATGTATCCACATATTCGTGAAGCTGTTGAAAAAAGAGAAGTGCTTCTTGAGTGGCATCCTCAACCTGGTGAAGACAAACCTCCAGTTCCTCTGTTGAAGGATGCTTTTGGTTCAGAAAGAAGGAAAGCAAAAATGCTCAACTTTTCCATTGCCTATGGAAAAACTGCAGTAGGGCTTGCCCGGGATTGGAAGGTGTCTGTGAGAGAAGCAAGGGAAACTGTTGAACGCTGGTATAAAGAGAGGAAAGAAGTGCTTGCTTGGCAAGAAAAACGTAAAAAAGAAGCTACAACTTTAAAATATGTTTGCACATTGCTAGGACGGGCCCGGTCTTTCCCTTCGGTGCATCATGCTACTGCTTCTCAAAGAGGCCACATTGAGCGAGCTGCCATAAATACCCCAGTGCAGGGTAGTGCTGCTGATGTTGCCATGTGTGCCATGTTAGAAATATCGAGGAATGCACGCTTAAAGGAGCTTGGATGGAAGCTGCTTTTACAGGTTCACGACGAAGTCATCCTGGAGGGACCAACAGAGTCGGCTGAAGTTGCTAAGGCAATCGTTGTGGAGTGCATGGAAAAACCCTTTGACGGCAAGAATATTCTTAGTGTCGACCTTGCTGTTGATGCTAAATGTGCCCAGAACTGGTACTCTGCCAAGTAG 3357 43.19 MRGAALAGSCRRCCNISMGEVHPLRGANGTLPGVIVFNNTLQRGQSLSYCRRPFIQLKKNGEANCCRSPHHTKHAICFSTSSVLILPRYPNWICAERKCFTRGLVNLQHLHGPVEPEVGFIPPRGAVGFGATSGVTRCSNPGSIWIEEANKLVEIKRQISQDGNAYVRSSIFTKYRSSNSNGITRKGNLQSSVGQGCIDHGQLKAQTHGPLYNSSVQGQIFAGDIGCETMTNDCASNVLAYPEKIQAGNKHISRNNVNSTAPHHSRKVVQSNGSLSMKPLEDREEANFIFSRDRAADAIENDESNERSIIPATGTHAFSQLEARRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENYDLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVDKVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDAECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINTPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLAVDAKCAQNWYSAK* 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 979170 997624 + Vvi19g86 Vvi19g86 781585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g86 1118 Gene3D - 335 591 IPR036397 GO:0003676
Vvi19g86 1118 CDD DNA_polA_I_Ecoli_like_exo 354 589 - -
Vvi19g86 1118 Gene3D - 869 1038 - -
Vvi19g86 1118 CDD DNA_pol_A_plastid_like 706 1115 - -
Vvi19g86 1118 Pfam 3'-5' exonuclease 413 557 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi19g86 1118 PRINTS DNA-polymerase family A (pol I) signature 815 837 IPR002298 GO:0003887|GO:0006261
Vvi19g86 1118 PRINTS DNA-polymerase family A (pol I) signature 838 853 IPR002298 GO:0003887|GO:0006261
Vvi19g86 1118 PRINTS DNA-polymerase family A (pol I) signature 860 883 IPR002298 GO:0003887|GO:0006261
Vvi19g86 1118 PRINTS DNA-polymerase family A (pol I) signature 890 903 IPR002298 GO:0003887|GO:0006261
Vvi19g86 1118 PRINTS DNA-polymerase family A (pol I) signature 1031 1047 IPR002298 GO:0003887|GO:0006261
Vvi19g86 1118 PRINTS DNA-polymerase family A (pol I) signature 1061 1074 IPR002298 GO:0003887|GO:0006261
Vvi19g86 1118 MobiDBLite consensus disorder prediction 253 273 - -
Vvi19g86 1118 Gene3D Taq DNA Polymerase; Chain T, domain 4 593 818 - -
Vvi19g86 1118 Gene3D - 824 1114 - -
Vvi19g86 1118 PANTHER DNA POLYMERASE I B, MITOCHONDRIAL 242 1118 - -
Vvi19g86 1118 PANTHER DNA POLYMERASE I 242 1118 IPR002298 GO:0003887|GO:0006261
Vvi19g86 1118 SUPERFAMILY Ribonuclease H-like 336 563 IPR012337 -
Vvi19g86 1118 Pfam DNA polymerase family A 783 1115 IPR001098 GO:0003677|GO:0003887|GO:0006260
Vvi19g86 1118 SUPERFAMILY DNA/RNA polymerases 572 1118 IPR043502 -
Vvi19g86 1118 SMART polaultra3 848 1078 IPR001098 GO:0003677|GO:0003887|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g86 K02335 polA; DNA polymerase I [EC:2.7.7.7] - vvi:100257153 2254.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g86 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006043 3 1 1 1 1 1 2 1 1 1 1 0 2 2 1 2 1 2 1 1 1 1 0 1 1 1 1 1 2 1 36