Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g871 ATGGACTTCTTCAATCAATTTTGTAATTCGTATCCATTTCCGTCAGATTCCCATTCTGTCAGCACGCCAGAGAGTTCTTCAGCGTCGGACTGGCAGACCCGGAGGACCATCCAATCCGACGAGGAAGTTCTGCGGGCGTCGGATCGGCCTAAGAAGCGCGCCTGTAGGAGGAAGTTTAAGGAGACACGGCACCCAGTGTACAGGGGAGTGAGGAGGAGGAACGGGAACATGTGGGTGTGCGAGCTGCGGGAGCCCAATAAGAAGTCGAGAATATGGCTGGGGACGACTCCATGGAGATTAGGAGGGAAATATTTTTAG 318 53.14 MDFFNQFCNSYPFPSDSHSVSTPESSSASDWQTRRTIQSDEEVLRASDRPKKRACRRKFKETRHPVYRGVRRRNGNMWVCELREPNKKSRIWLGTTPWRLGGKYF* 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 13983529 13983968 - Vvi19g871 Vvi19g871 782370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g871 105 MobiDBLite consensus disorder prediction 11 34 - -
Vvi19g871 105 Pfam AP2 domain 65 95 IPR001471 GO:0003700|GO:0006355
Vvi19g871 105 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 97 - -
Vvi19g871 105 SUPERFAMILY DNA-binding domain 66 95 IPR016177 GO:0003677
Vvi19g871 105 MobiDBLite consensus disorder prediction 35 49 - -
Vvi19g871 105 Gene3D AP2/ERF domain 66 97 IPR036955 GO:0003700|GO:0006355
Vvi19g871 105 ProSiteProfiles AP2/ERF domain profile. 66 97 IPR001471 GO:0003700|GO:0006355
Vvi19g871 105 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 97 IPR045277 GO:0003700
Vvi19g871 105 MobiDBLite consensus disorder prediction 11 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g871 - - - vvi:100253072 197.208
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2