Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g874 ATGTCGCTGACAGAGATTTCGATAATACATCATGTGGCAATGGTGCTGATTTTTCTCTGGCTGCTTTCTTCTTTAAGTTGGAACCACCCAATTGCTTACTTTGTGTCTTTGATTTATCTCTACCAGGTTCATGAGCAGTATATTATGAGGATGAGGAGGAAACTACAATTCAAGGAAAGAAAAGAAGCTAATCGGAAAAGGGTACTTTCTGATTCTGAGTCAGTGCGGTGGTTGAACCATGCAGTTGAAAAGATTTGGCCCATATGTATGGAACAGATTGTTTCACAGAAAATTCTCCTTCCTATCATACCTTGGTTCTTGGAGAAGTACAAACCCTGGACAGCTAAGAAAGCCATTGTTCAGCACTTGTACATGGGAAGAAACCCACCTATGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGGTTTTGGGGTTGGGAATGAATTTTCTCACTGCTGATGATATGAGTGCAATACTAGCTATAAAACTGAGGAGAAGATTGGGATTTGGAATGTGGGCAAAATTACATTTGACTGGCATGCATGTTGAAGGGAAGGTTTTGATTGGAGTAAAGTTTATACGGAATTGGCCATTCATTGGTCGTTTGAGGGTGTGCTTTGCAGAGCCACCATATTTTCAGATGACAGTGAAGCCTATCTTCACTCATGGACTTGATGTTACAGAACTTCCAGGGATTGCTGGATGGCTAGATAAGCTTCTTGCTGTTGCATTTGAGCAGACTCTTGTTGAGCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAGAGGATTGGTTCTCGGTCGATGAGAAGGAGCCTATTGCCCTTGCCAGAGTGGAAGTTCTTGAAGCATCAGACATGAAACCATCAGATTTAAATGGATTGGCTGATCCATATGTAAAGGGGAAACTTGGACCTTACAGATTCACGACTAAGATACAAAAGAAGACTCTCACTCCAAAATGGAATGAAGAATTCAAGATCCCCATCTGTTCATGGGAGTTGCCTAATATGCTAGTCATTGAAGTTCGTGACAAAGACCATTTTGTTGACGATACCCTTGGGGCCTGTTCCCTAAACATCAATGATCTTAGGGGTGGCCAGAGACATGACATGTGGTTGCCTCTCAAGAACATCAAAATGGGGAGGTTGCATCTTGCAATTACTGTACTTGAAGACAACGAAGAGGAAGCAGATCAGCTAGATGACGAGGAAATACTTGATCATAAAACATTAGATGAAGAAGATAAAGATCAGGAAGATAAAAGAAATTCCCTTGCAAGGGAGACTTCTCTCAGAGATTCCTTCTCATCTGCATCAGAAAGAACTTCAAAAGTGGCAGATAAATATGAACCCATCAATCTTGAAGGGCAGCAGGAGACTGGAATATGGGTCCACCACCCAGGAAGTGAAGTTTCACAAACTTGGGAGCCTAGAAAAGGGAAGAGTAGGCACATTGATTCCCAAATCACTGGAGAGGGTAATGATTCTTTTAGGAGCCCTAATTCAATTGCATATGGATCATTTCACAATGATGGCAGCAGCACTGACGAGAATTCTGAGGGTAAGAAAGCACAAGCAATGAACACAGTTCGGAGGGGCCTAGAGAAGATTGGTACAGTTGGCACTGAAAGCCCGAGCCAGGGGAATGTGAAAGACATGGCAAAATGCTTTTTAAAGCAGGCTGGGAAATCTGCTCGTGGCATAAAACATGCCCTTTCCCGGAAAGGTTCAAGAAAATCTCAGGGTGATCAAGAAATTCCTGTCCATGGAAATGATCCTGTAGCCCATAAGGAGCAAGTTGTTTTGATAGGTGCTCCTGCTGCTAGCATTGAGGAACCAGTGAGTGAGACGAAAGTGGATGATGAAGGTAGAGAAGGGATGGGCGATAACATTGCAAGCAGCTCTGAAGGAAATGGTGATGAGTTGGTTGAGCAGTCATCCAGTTTTGAGCCTTCTGTGGAGAAGTTGGTTGTATCTTGTGTTATATTTGCGTGTCATGATGGTTATTTGAGTATTGGTTGTATATACTTGTATTCCATGTGGACGAATAATGTACAACCAAAAAGGTTTACGGCTTCTTTTATAAATTTCAAATTTATAGCTGATGAACCATACACTGCAGGTGCAGGTTTCAATCATTTTATTTGTTTTCTGAAATCAACTCTTTTTTCTTTTGCGAAGCATGAAACTACAGCAATATCAAATCCATTTTGTGGGTTTTGGCAGCGCCAGTTTCCCCAAAAATCGCTTTTATCTTTCCACTCTATTTTATCTTTTTTTTTAAAAAAAAAAAATTAA 2331 41.1 MSLTEISIIHHVAMVLIFLWLLSSLSWNHPIAYFVSLIYLYQVHEQYIMRMRRKLQFKERKEANRKRVLSDSESVRWLNHAVEKIWPICMEQIVSQKILLPIIPWFLEKYKPWTAKKAIVQHLYMGRNPPMFTEMRVIRESTDDDHLVLGLGMNFLTADDMSAILAIKLRRRLGFGMWAKLHLTGMHVEGKVLIGVKFIRNWPFIGRLRVCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLAVAFEQTLVEPNMLVVDVEKFVSPNKEDWFSVDEKEPIALARVEVLEASDMKPSDLNGLADPYVKGKLGPYRFTTKIQKKTLTPKWNEEFKIPICSWELPNMLVIEVRDKDHFVDDTLGACSLNINDLRGGQRHDMWLPLKNIKMGRLHLAITVLEDNEEEADQLDDEEILDHKTLDEEDKDQEDKRNSLARETSLRDSFSSASERTSKVADKYEPINLEGQQETGIWVHHPGSEVSQTWEPRKGKSRHIDSQITGEGNDSFRSPNSIAYGSFHNDGSSTDENSEGKKAQAMNTVRRGLEKIGTVGTESPSQGNVKDMAKCFLKQAGKSARGIKHALSRKGSRKSQGDQEIPVHGNDPVAHKEQVVLIGAPAASIEEPVSETKVDDEGREGMGDNIASSSEGNGDELVEQSSSFEPSVEKLVVSCVIFACHDGYLSIGCIYLYSMWTNNVQPKRFTASFINFKFIADEPYTAGAGFNHFICFLKSTLFSFAKHETTAISNPFCGFWQRQFPQKSLLSFHSILSFFLKKKN* 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 14064458 14074173 - Vvi19g874 Vvi19g874 782373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g874 776 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 555 615 - -
Vvi19g874 776 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 5 548 - -
Vvi19g874 776 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 555 615 - -
Vvi19g874 776 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 5 548 - -
Vvi19g874 776 CDD C2 288 386 - -
Vvi19g874 776 MobiDBLite consensus disorder prediction 481 536 - -
Vvi19g874 776 PRINTS C2 domain signature 302 314 IPR000008 -
Vvi19g874 776 PRINTS C2 domain signature 326 339 IPR000008 -
Vvi19g874 776 PRINTS C2 domain signature 349 357 IPR000008 -
Vvi19g874 776 ProSiteProfiles C2 domain profile. 270 384 IPR000008 -
Vvi19g874 776 MobiDBLite consensus disorder prediction 623 655 - -
Vvi19g874 776 Pfam C2 domain 288 386 IPR000008 -
Vvi19g874 776 MobiDBLite consensus disorder prediction 405 461 - -
Vvi19g874 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 403 IPR035892 -
Vvi19g874 776 MobiDBLite consensus disorder prediction 500 536 - -
Vvi19g874 776 Gene3D C2 domain 269 402 IPR035892 -
Vvi19g874 776 SMART C2_3c 286 383 IPR000008 -
Vvi19g874 776 MobiDBLite consensus disorder prediction 414 439 - -
Vvi19g874 776 MobiDBLite consensus disorder prediction 583 602 - -
Vvi19g874 776 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 71 265 IPR031468 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g874 - - - vri:117908770 1099.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g874 Blo03g00728 . . . . . . . . . . . . . . . . Bhi09g03594 . . . Hepe01g1487 . . . . . . . . . Cone6ag0227 Cone9ag0260 . . Lsi04g01952 . . . . Blo10g00713 . Bda12g00801 . . Bma07g01119 . . . Cmo09g00683 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004301 1 2 4 3 2 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 41