Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g883 ATGGAAATGAAGCAGCTGAACTTAGTTGCCTTATCCTTTACTTTCATCACTATCCTAATATATGCATGGAGGATACTGAATTGGATGTGGTTGAGGCCGAAAAGGCTAGAGAGGTGCCTTAAACAGCAAGGTCTGGCGGGAAATTCTTACAGGCTGTTGCATGGGGACTTCAAAGAAATGTTCATGATGATAAAGGAAGCAACTTCAAGACCCATCAGCATCTCTGATGATATTGTGCAGCGTATCGCACCTTTTCATTACCATTCCATCAAGAAATATGGTAAAAGTTCTTTTATATGGATGGGCCCAAAACCAAGGGTCAACATTATGGAGCCTGAACTGATAAGGGATGTTTTGTCCATGCACACTGTCTTCCGAAAGCCAAGGGTTCATGCACTTGTGAAGCTGCTTGTTTCTGGACTACTTTTTTTGGATGGTGAGAAATGGGCTAAACATAGAAAGATCATAAACCCCGCATTCCGACTAGAAAAAGTGAAGAACATGTTACCCGCATTTCATTTGAGCTGTAGCGACATGATAAGCAAATGGGAGGGGAAGCTCTCAACAGAGGGGTCATGTGAGTTGGATGTTTGGCCCTATCTTCAAAATTTGACAGGTGATGCGATTTCGCGGACAGCATTTGGTAGTAACTATGAAGAAGGAAGAATGATATTCGAACTGCAGAGAGAGCAAGCGCAACTTTTGGTCCAGTTCTCAGAGTCAGCTTTCATTCCAGGATGGCGGTTTTTGCCTACAAAGTCCAATAAGAGGATGAAGCAAAATAGAAAAGAAGTAAATGAGTTGTTGTGGGGTATTATTGACAAAAGAGAGAAGGCAATGAAGGCTGGCGAAACTCTTAATGATGACTTATTAGGTATACTACTGGAATCCAATTTTAAAGAAATTCAAGAACATGGCAATGACAAGAACGTTGGAATGAGTATCAAAGATGTCATTGACGAGTGTAAGATATTTTACTTTGCCGGTCAAGAGACTACCTCAGTTCTGCTTCTATGGACAATGATTCTATTAAGCAAACATCCAAACTGGCAAGCTCGTGCAAGAGAAGAGGTTTTACATGTTTTTGGCAACAACAAACCCGAAGGAGATGGACTAAATCACCTTAAAATTGTTATGATGATTCTTCATGAGGTTCTTAGGCTATATCCACCGGTCCCCTTGCTTGCTCGAACTGTTTATGAGGACATCCAAGTAGGAGACATGTATTTACCTGCTGGAGTGGATGTCTCCTTACCAACAATCCTGGTACATCATGATCATGAAATTTGGGGAGAAGATGCAAGGGAGTTCAATCCAGAGAGGTTCTCCCAAGGAGCTTTGAAGGCAACGAAAAGTCTAGTTTCATTCTTCCCCTTTGGTTGGGGTTCTCGATTATGCATTGGACAAAACTTTGCAATATTGGAAGCTAAAATGGTGCTTGCAATGATCCTACAGCGCTTCTCATTCAGCCTTTCACCATCCTATTCTCATGCTCCTTGTAGTCTTGTTACTTTGAAACCCCAATATGGGGCACACTTGATTTTACATGGGATCTAG 1557 41.68 MEMKQLNLVALSFTFITILIYAWRILNWMWLRPKRLERCLKQQGLAGNSYRLLHGDFKEMFMMIKEATSRPISISDDIVQRIAPFHYHSIKKYGKSSFIWMGPKPRVNIMEPELIRDVLSMHTVFRKPRVHALVKLLVSGLLFLDGEKWAKHRKIINPAFRLEKVKNMLPAFHLSCSDMISKWEGKLSTEGSCELDVWPYLQNLTGDAISRTAFGSNYEEGRMIFELQREQAQLLVQFSESAFIPGWRFLPTKSNKRMKQNRKEVNELLWGIIDKREKAMKAGETLNDDLLGILLESNFKEIQEHGNDKNVGMSIKDVIDECKIFYFAGQETTSVLLLWTMILLSKHPNWQARAREEVLHVFGNNKPEGDGLNHLKIVMMILHEVLRLYPPVPLLARTVYEDIQVGDMYLPAGVDVSLPTILVHHDHEIWGEDAREFNPERFSQGALKATKSLVSFFPFGWGSRLCIGQNFAILEAKMVLAMILQRFSFSLSPSYSHAPCSLVTLKPQYGAHLILHGI* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 14954548 14957701 + Vvi19g883 Vvi19g883 782382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g883 518 Gene3D Cytochrome P450 78 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 Pfam Cytochrome P450 91 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Vvi19g883 518 PANTHER CYTOCHROME P450 FAMILY MEMBER 14 514 - -
Vvi19g883 518 SUPERFAMILY Cytochrome P450 81 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PANTHER CYTOCHROME 14 514 - -
Vvi19g883 518 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS P450 superfamily signature 457 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g883 518 PRINTS P450 superfamily signature 466 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g883 - - vvi:100248909 1046.19