Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g898 ATGGTGGTCTTGTCGAAACCAACAATTGCAGACTTCCCTCCTATCATAAACTGCAAATCCACCACATTATTCCCGGTTATTCCTACGGTGGACCTCTCAGAGCCCGACTCCAAACACCTTGTCGTGAAGTCCTGTGAAGAGTTTGGTTTCTTCAAGGTGATCAATCATGGCATCCCACTGGAGCTCATTTCAAGATTGGAAACCGAAGTCATTGAGTTCTTCTCCTTATCACTTTCTGAGAAACAAAAAGCAGGCCCTCCTGATCCGTTTGGCTATGGAAACAGGAGCATTGGGCCAAATGGGGATGTCGGCTGGGTTGAATATCTTCTCCTTACGATGAATCAGGAACGCAATTCTCAGAAACTTGCAACAATTTTTGGCAAATACCCAGAAAAGCTGTGTTCTGCATTGAATGATTATGTGTTAGCTGTTAAAAAGATGGCTTGCGAGCTTCTTGAATTAATGGCGGATGGTTTGAGAATCAAACCAAGGAATGTTTTCAGTAAGCTTTTAATGGATGAGCAGAGTGACTCTGTTTTCAGGCTAAATCACTATCCACCATATTCAGAGCTTCAAGCTTCGAATGGTAAGAATATGATTGGATTTGGAGAACACACAGACCCTCAGATCATTTCAGTTCTAAGATCCAACAACACATCTGGACTGCAAATCTCTTTGGGAAATGGAAGCTGGATTTCAGTCCCACCTGATGCCAACTCCTTCTTCATCAACGTTGGTGACTCCTTACAGGTGATGACCAATGGGAGGTTTAAAAGTGTGAGGCATAGGGTTTTGGCCAACAGCATCAAGTCAAGAATTTCAATGATATACTTTGGAGGACCACCCTTGAATGAGAAAATAGCTCCATTACCCTCGCTCGTGGAAGGAAAGGAGAGCCTCTACAAAGAATTTACGTGGTTTGAGTACAAAAGGTCTGCTTACAAGTCAAGATTGGGCGACAATAGGCTTAGCCAGTTTGAGAGGACGGCCGCCACATAG 999 43.74 MVVLSKPTIADFPPIINCKSTTLFPVIPTVDLSEPDSKHLVVKSCEEFGFFKVINHGIPLELISRLETEVIEFFSLSLSEKQKAGPPDPFGYGNRSIGPNGDVGWVEYLLLTMNQERNSQKLATIFGKYPEKLCSALNDYVLAVKKMACELLELMADGLRIKPRNVFSKLLMDEQSDSVFRLNHYPPYSELQASNGKNMIGFGEHTDPQIISVLRSNNTSGLQISLGNGSWISVPPDANSFFINVGDSLQVMTNGRFKSVRHRVLANSIKSRISMIYFGGPPLNEKIAPLPSLVEGKESLYKEFTWFEYKRSAYKSRLGDNRLSQFERTAAT* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 15603206 15604930 + Vvi19g898 Vvi19g898 782397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g898 332 PRINTS Isopenicillin N synthase signature 41 58 - -
Vvi19g898 332 PRINTS Isopenicillin N synthase signature 205 226 - -
Vvi19g898 332 PRINTS Isopenicillin N synthase signature 241 267 - -
Vvi19g898 332 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 175 281 IPR005123 -
Vvi19g898 332 PANTHER GIBBERELLIN 2-OXIDASE 4 329 - -
Vvi19g898 332 SUPERFAMILY Clavaminate synthase-like 7 321 - -
Vvi19g898 332 Pfam non-haem dioxygenase in morphine synthesis N-terminal 27 94 IPR026992 -
Vvi19g898 332 Gene3D - 6 319 IPR027443 -
Vvi19g898 332 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 329 - -
Vvi19g898 332 Pfam 2OG-Fe(II) oxygenase superfamily 177 279 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g898 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - vvi:100248356 667.922
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g898 . . . . . . . . Cmo16g00489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00453 . Car16g00411 Cpe14g00383 . . . . . . . . Cla07g00995 Cam07g1070 Cec07g1142 Cco07g1120 Clacu07g1044 Cmu07g1035 Cre07g1411 . . Chy07g01013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43