Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g90 ATGGCCGATATCGAAACCCTAGGTATTCTCGAAGAGATCGAAGCCCTAGTCTCCGATAAGCTTCAAGTGGTTTCCTACAAGTGGCTGAGTCGTAGTTTTTTGGTGACATCAAATGTGGCAAAAAGGTTGCTTCATGAGTTTGTTGAAAAACATGGAGGTGGGTTGGAAGTAGTTTATACTTTGTCTGGCTGGTTGAAGAATGATCCTCCAGTTTACCATATAAGGCTTGTTTCTGAACCTAAACTTGCAGAAGCAAAACAGGAATTTGATGGCCATTGCTCGGTTCAGGTTTATAGTGTGCAAGCTTGCATTCCAAAGGATCCAGCTGCACTTTGGAATGCTGAATTTGTGCAAGCAGAAGAGCTTTTTAAGCAGCCCTTCGCAGTTGATAATTGCTTGAGAGATAACAGGTTCTGTGGAATTTCCAATTCTTTTGTCAAGCGCATTGCTGAGGGAGCACCTCTGTTCAACAGCCTCAGGAAAGAAAAGTACAGCAATCAAGCCCAAAAGTCAGTTTGCAGAAAAGCTCCTCCACTGCCTGCTAATAAAAAGAAAGGCCAGAATGATAAAAGTTCTGGAACTGAAGGCTCATTGGCAAATATGTGGGGGCGTGCATCTGTAAAGTCAAAGCCCAGTTGTGCCCCAGTGGATGTTGGTAAATTCATTGCAAATCCAATTCCTTGCGCAGAAGCTCAAATTTGTGCTCGTGAAGCTGTAGAAGGTGCGAGCAGTGATGAAGATGGTCAAGATGCCAATTTTAAGAGAGCCTCCAATGGTGATGGTGGTAGAAAGAGGAGAGTTGTTTTTGATTTCTCAGATGAAGAAGAGGAGTTTGAAGATGCAGTCAATTTGGCATCACCAGATCCTCCAAAAGGGAAATCATGTATAGTTTCAAAACAAAGTCCTAAACCTTTGGTTCCTGACAAAATCAATTTGAATTCTGACCAGCAAAAACAAGATAAACCAAAGGTCAAGGAAGAGAAATCATCTAATAGAGAATCTAACCTATCACCAAGGGAAGATTCTTCAGTTCTCAGCAAAGGCAAGAACAATGGGATTTCCTCTTCAGACAAGATTGCAGGTGGAGTTCCTGAAATTGATGTAAATAAGAAGGATAAAGTGACAGATGCTGCTCCAAATTCTCCTAAAAGAAGGAAAGTGATGAAAACACGGATAGATGAGCGTGGGAGAGAAGTAACCGAGGTAGTCTGGGAGGGTGAGGCAGAGACGAAGAAAGCTGACAGCAATGAGACAAAGAAATCTGAAAATAGTATAGTCACCAATGCGGCTAACAGGGCCCCTCCTGCTAAGAAATCGCCAGCAGTGGGAAACACCGCCCCTTCTAATGTAACTGGCAAAGCAGGAAGCAAGAAAGCAGGAAACTCGAAAGATCCTAAGCAGGGAAATATTATGTCATTCTTCAAGAGGGTTTGA 1434 42.82 MADIETLGILEEIEALVSDKLQVVSYKWLSRSFLVTSNVAKRLLHEFVEKHGGGLEVVYTLSGWLKNDPPVYHIRLVSEPKLAEAKQEFDGHCSVQVYSVQACIPKDPAALWNAEFVQAEELFKQPFAVDNCLRDNRFCGISNSFVKRIAEGAPLFNSLRKEKYSNQAQKSVCRKAPPLPANKKKGQNDKSSGTEGSLANMWGRASVKSKPSCAPVDVGKFIANPIPCAEAQICAREAVEGASSDEDGQDANFKRASNGDGGRKRRVVFDFSDEEEEFEDAVNLASPDPPKGKSCIVSKQSPKPLVPDKINLNSDQQKQDKPKVKEEKSSNRESNLSPREDSSVLSKGKNNGISSSDKIAGGVPEIDVNKKDKVTDAAPNSPKRRKVMKTRIDERGREVTEVVWEGEAETKKADSNETKKSENSIVTNAANRAPPAKKSPAVGNTAPSNVTGKAGSKKAGNSKDPKQGNIMSFFKRV* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1034869 1045969 + Vvi19g90 Vvi19g90 781589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g90 477 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 7 148 IPR041913 -
Vvi19g90 477 Pfam DNA polymerase subunit Cdc27 23 476 IPR019038 GO:0005634|GO:0006260|GO:0043625
Vvi19g90 477 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 1 157 IPR019038 GO:0005634|GO:0006260|GO:0043625
Vvi19g90 477 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 161 476 IPR019038 GO:0005634|GO:0006260|GO:0043625
Vvi19g90 477 MobiDBLite consensus disorder prediction 279 392 - -
Vvi19g90 477 MobiDBLite consensus disorder prediction 442 468 - -
Vvi19g90 477 MobiDBLite consensus disorder prediction 364 392 - -
Vvi19g90 477 MobiDBLite consensus disorder prediction 406 477 - -
Vvi19g90 477 MobiDBLite consensus disorder prediction 241 264 - -
Vvi19g90 477 MobiDBLite consensus disorder prediction 336 357 - -
Vvi19g90 477 MobiDBLite consensus disorder prediction 314 335 - -
Vvi19g90 477 MobiDBLite consensus disorder prediction 167 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g90 K03504 POLD3; DNA polymerase delta subunit 3 - vvi:100250468 822.772
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g90 . . . . . Bpe08g00987 . . . . Cma01g01250 . . . . . . . . . . . . . . . . . . . . Cone6ag0201 Cone9ag0232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010815 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 30