Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g91 ATGGGTTGTGCTGGATCGTCACAGACCAAAGGAGATGGGACTGTAAAGAAGATACGGAAGCCAAAGCCTTGGAAGAATCCTCAACCGCTTACAAAAACTCAGCTCATGCAGATGCGTGATGAATTTTGGGACACAGCTCCTCACTATGGTGGCCAGAAAGAGATCTGGGATGCACTTCGAGCTGCTGCCGAAGCTGATCTAACCCTTGCACAAGCAATTGTGGACAGCGCAGGGGTCATTGTTCAAAGTGCCGATTTGACAATTTGCTATGATGAAAGAGGTGCAAAATATGAACTACCCCATTATGTTTTGAGTGAGCCAACCAACTTGATTCGAGACGGTTGA 345 46.96 MGCAGSSQTKGDGTVKKIRKPKPWKNPQPLTKTQLMQMRDEFWDTAPHYGGQKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPHYVLSEPTNLIRDG* 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1048081 1053505 - Vvi19g91 Vvi19g91 781590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g91 114 Gene3D - 31 104 IPR038169 -
Vvi19g91 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 111 IPR039869 -
Vvi19g91 114 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 111 - -
Vvi19g91 114 MobiDBLite consensus disorder prediction 1 31 - -
Vvi19g91 114 Pfam Ubiquitin-binding domain 16 113 IPR032752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g91 - - - vvi:100267634 229.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g254 Vvi19g91 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g91 Blo03g00703 . . Bda09g00548 Bpe09g00264 Bpe08g00988 . Bma13g00925 Cmo16g00465 . . . Car01g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00727 . Bda12g00815 Bpe11g00442 . . Bma14g00272 . Cmo01g01308 . Cma04g00665 Cma16g00432 . . Cpe14g00364 Cpe01g00600 . . . . . . . . . . . . . . . Csa04g00814 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001260 3 5 3 5 4 1 3 2 1 2 2 2 3 2 2 2 2 0 3 2 2 2 2 2 2 2 2 5 3 2 73